- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NAP.2: 25 residues within 4Å:- Chain A: K.72, A.74, T.75, I.76, T.77, R.82, N.96, L.288, G.289, A.307, A.308, H.309, G.310, T.311, V.312, T.313, R.314, H.315, T.327, N.328
- Chain B: L.250, D.253, Q.257, K.260
- Ligands: AKG.3
31 PLIP interactions:22 interactions with chain A, 9 interactions with chain B- Hydrogen bonds: A:K.72, A:T.75, A:T.77, A:T.77, A:T.77, A:R.82, A:R.82, A:N.96, A:A.308, A:H.309, A:G.310, A:G.310, A:T.311, A:V.312, A:T.313, A:N.328, B:Q.257
- Water bridges: A:R.314, A:H.315, A:A.331, B:T.214, B:D.253, B:D.253, B:D.253, B:D.253, B:K.260, B:K.260
- Salt bridges: A:R.314, A:H.315, B:K.260
- pi-Stacking: A:H.309
NAP.6: 25 residues within 4Å:- Chain A: L.250, D.253, Q.257, K.260
- Chain B: K.72, A.74, T.75, I.76, T.77, R.82, N.96, L.288, G.289, A.307, A.308, H.309, G.310, T.311, V.312, T.313, R.314, H.315, T.327, N.328
- Ligands: AKG.7
29 PLIP interactions:22 interactions with chain B, 7 interactions with chain A- Hydrogen bonds: B:K.72, B:T.75, B:T.77, B:T.77, B:R.82, B:R.82, B:N.96, B:A.308, B:G.310, B:G.310, B:T.311, B:V.312, B:T.313, B:N.328, B:N.328, A:D.253, A:Q.257
- Water bridges: B:T.75, B:T.77, B:H.315, B:A.331, A:D.253, A:D.253, A:D.253, A:K.260
- Salt bridges: B:R.314, B:H.315, A:K.260
- pi-Stacking: B:H.309
- 2 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)
AKG.3: 13 residues within 4Å:- Chain A: T.77, S.94, N.96, R.100, R.109, Y.139, D.275, A.308
- Chain B: K.212, I.215, D.252
- Ligands: CA.1, NAP.2
10 PLIP interactions:8 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:S.94, A:N.96, A:Y.139, A:D.275, B:K.212
- Water bridges: A:T.77, A:T.77, B:T.214
- Salt bridges: A:R.100, A:R.109
AKG.7: 13 residues within 4Å:- Chain A: K.212, I.215, D.252
- Chain B: T.77, S.94, N.96, R.100, R.109, Y.139, D.275, A.308
- Ligands: CA.5, NAP.6
10 PLIP interactions:7 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:T.77, B:S.94, B:N.96, B:D.275, A:K.212
- Water bridges: B:T.77, A:T.214
- Salt bridges: B:R.100, B:R.109, A:K.212
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rendina, A.R. et al., Mutant IDH1 Enhances the Production of 2-Hydroxyglutarate Due to Its Kinetic Mechanism. Biochemistry (2013)
- Release Date
- 2013-07-17
- Peptides
- Isocitrate dehydrogenase [NADP] cytoplasmic: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 2 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rendina, A.R. et al., Mutant IDH1 Enhances the Production of 2-Hydroxyglutarate Due to Its Kinetic Mechanism. Biochemistry (2013)
- Release Date
- 2013-07-17
- Peptides
- Isocitrate dehydrogenase [NADP] cytoplasmic: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B