Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 6vg0.2
(1 other biounit)
CRYSTAL STRUCTURE OF HUMAN CYTOSOLIC ISOCITRATE DEHYDROGENASE (IDH1) R132H MUTANT IN COMPLEX WITH NADPH and AGI-15056
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.66 Å
Oligo State
homo-dimer
Ligands
2 x
QWM
:
N~2~,N~4~-bis[(1R)-1-cyclopropylethyl]-6-[6-(trifluoromethyl)pyridin-2-yl]-1,3,5-triazine-2,4-diamine
(Non-covalent)
QWM.1:
21 residues within 4Å:
Chain A:
W.124
,
I.251
,
V.255
,
M.259
,
Y.272
,
D.273
,
V.276
,
Q.277
,
S.280
,
V.281
Chain B:
W.124
,
V.255
,
A.258
,
M.259
,
Y.272
,
D.273
,
V.276
,
Q.277
,
S.280
,
V.281
Ligands:
QWM.3
15
PLIP interactions
:
10 interactions with chain B
,
5 interactions with chain A
Hydrophobic interactions:
B:W.124
,
B:V.255
,
B:V.255
,
B:M.259
,
B:V.276
,
B:Q.277
,
B:V.281
,
A:W.124
,
A:V.281
Hydrogen bonds:
B:Q.277
,
B:S.280
,
B:S.280
,
A:Q.277
,
A:Q.277
Halogen bonds:
A:D.273
QWM.3:
21 residues within 4Å:
Chain A:
W.124
,
V.255
,
A.258
,
M.259
,
Y.272
,
D.273
,
V.276
,
Q.277
,
S.280
,
V.281
Chain B:
W.124
,
I.251
,
V.255
,
M.259
,
Y.272
,
D.273
,
V.276
,
Q.277
,
S.280
,
V.281
Ligands:
QWM.1
15
PLIP interactions
:
5 interactions with chain B
,
10 interactions with chain A
Hydrophobic interactions:
B:W.124
,
B:V.281
,
A:W.124
,
A:V.255
,
A:V.255
,
A:M.259
,
A:V.276
,
A:Q.277
,
A:V.281
Hydrogen bonds:
B:Q.277
,
B:Q.277
,
A:Q.277
,
A:S.280
,
A:S.280
Halogen bonds:
B:D.273
2 x
NDP
:
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
(Non-covalent)
NDP.2:
21 residues within 4Å:
Chain A:
K.72
,
A.74
,
T.75
,
I.76
,
T.77
,
R.82
,
N.96
,
S.287
,
L.288
,
G.289
,
E.306
,
A.308
,
H.309
,
G.310
,
T.311
,
V.312
,
R.314
,
H.315
,
T.327
,
N.328
,
D.375
19
PLIP interactions
:
19 interactions with chain A
Hydrogen bonds:
A:T.75
,
A:T.77
,
A:T.77
,
A:R.82
,
A:N.96
,
A:S.287
,
A:G.289
,
A:E.306
,
A:G.310
,
A:G.310
,
A:T.311
,
A:T.311
,
A:V.312
,
A:N.328
,
A:N.328
Salt bridges:
A:R.314
,
A:H.315
pi-Cation interactions:
A:H.315
,
A:H.315
NDP.4:
21 residues within 4Å:
Chain B:
K.72
,
A.74
,
T.75
,
I.76
,
T.77
,
R.82
,
N.96
,
S.287
,
L.288
,
G.289
,
E.306
,
A.308
,
H.309
,
G.310
,
T.311
,
V.312
,
R.314
,
H.315
,
T.327
,
N.328
,
D.375
19
PLIP interactions
:
19 interactions with chain B
Hydrogen bonds:
B:T.75
,
B:T.77
,
B:T.77
,
B:R.82
,
B:N.96
,
B:S.287
,
B:G.289
,
B:E.306
,
B:G.310
,
B:G.310
,
B:T.311
,
B:T.311
,
B:V.312
,
B:N.328
,
B:N.328
Salt bridges:
B:R.314
,
B:H.315
pi-Cation interactions:
B:H.315
,
B:H.315
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Konteatis, Z. et al., Vorasidenib (AG-881): A First-in-Class, Brain-Penetrant Dual Inhibitor of Mutant IDH1 and 2 for Treatment of Glioma. Acs Med.Chem.Lett. (2020)
Release Date
2020-02-05
Peptides
Isocitrate dehydrogenase [NADP] cytoplasmic:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
C
B
C
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
Isocitrate dehydrogenase [NADP] cytoplasmic
Toggle Identical (AB)
Related Entries With Identical Sequence
3inm.1
|
3inm.2
|
4kzo.1
|
4kzo.2
|
4umx.1
|
4umy.1
|
5lge.1
|
5lge.2
|
6adg.1
|
6adg.2
|
6o2z.1
|
6u4j.1
|
6vei.1
|
6vg0.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme