SMTL ID : 4ln6.1 (7 other biounits)

The crystal structure of hemagglutinin from a h7n9 influenza virus (a/shanghai/2/2013)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

hetero-3-3-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.32, T.34, T.313 Chain B: L.52 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-BMA.2: 4 residues within 4Å: Chain C: N.32, T.34, T.313 Chain D: L.52 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.4: 5 residues within 4Å: Chain E: N.32, T.34, T.313 Chain F: L.52 Ligands: NAG-NAG-BMA-FUC.3 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-FUC.3: 4 residues within 4Å: Chain E: N.16, T.18, N.32 Ligands: NAG-NAG-BMA.4 No protein-ligand interaction detected (PLIP)

3 x CA: CALCIUM ION(Non-covalent)

CA.5: 3 residues within 4Å: Chain A: E.75, D.113, K.114 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.75, A:D.113, A:K.114 CA.7: 3 residues within 4Å: Chain C: E.75, D.113, K.114 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:E.75, C:D.113, C:K.114 CA.9: 3 residues within 4Å: Chain E: E.75, D.113, K.114 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:E.75, E:D.113, E:K.114

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 4 residues within 4Å: Chain B: E.72, K.75, N.79, N.82 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:K.75 Hydrogen bonds: B:E.72 NAG.8: 4 residues within 4Å: Chain D: E.72, K.75, N.79, N.82 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:K.75 NAG.10: 4 residues within 4Å: Chain F: E.72, K.75, N.79, N.82 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:K.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Structural Analysis of the Hemagglutinin from the Recent 2013 H7N9 Influenza Virus. J.Virol. (2013)

Release Date

2013-10-02

Peptides

Hemagglutinin: ACE
Hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Hemagglutinin

Hemagglutinin

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