SMTL ID : 4ln8.8 (7 other biounits)

The crystal structure of hemagglutinin from a h7n9 influenza virus (a/shanghai/2/2013) in complex with lstb

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 3 residues within 4Å: Chain A: N.32, T.34, T.313 No protein-ligand interaction detected (PLIP)

1 x GAL- NAG- GAL- SIA: beta-D-galactopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)]2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose

GAL-NAG-GAL-SIA.2: 13 residues within 4Å: Chain A: Y.92, G.128, A.129, T.130, S.131, W.146, L.148, H.178, V.181, E.185, L.189, L.221, G.223 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.189 Hydrogen bonds: A:A.129, A:A.129, A:T.130, A:S.131, A:H.178 Water bridges: A:S.138, A:S.138

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 3 residues within 4Å: Chain A: E.75, D.113, K.114 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.75, A:D.113, A:K.114

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 4 residues within 4Å: Chain B: E.72, K.75, N.79, N.82 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:K.75 Hydrogen bonds: B:E.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Structural Analysis of the Hemagglutinin from the Recent 2013 H7N9 Influenza Virus. J.Virol. (2013)

Release Date

2013-10-02

Peptides

Hemagglutinin: A
Hemagglutinin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
L

Hemagglutinin

Hemagglutinin

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