SMTL ID : 4ln6.5 (7 other biounits)

The crystal structure of hemagglutinin from a h7n9 influenza virus (a/shanghai/2/2013)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

hetero-3-3-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.32, T.34, T.313 Chain B: L.52 No protein-ligand interaction detected (PLIP)

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: E.75, D.113, K.114 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.75, A:D.113, A:K.114, H2O.1 CA.6: 3 residues within 4Å: Chain C: E.75, D.113, K.114 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.75, C:D.113, C:K.114, H2O.2 CA.8: 3 residues within 4Å: Chain E: E.75, D.113, K.114 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:E.75, E:D.113, E:K.114

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain B: E.72, K.75, N.79, N.82 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:K.75 Water bridges: B:N.79 NAG.7: 5 residues within 4Å: Chain C: R.295 Chain D: E.72, K.75, N.79, N.82 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:K.75 Hydrogen bonds: D:E.72 NAG.9: 5 residues within 4Å: Chain E: R.295 Chain F: E.72, K.75, N.79, N.82 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:K.75 Water bridges: F:E.72

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-BMA.4: 4 residues within 4Å: Chain C: N.32, T.34, T.313 Chain D: L.52 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.5: 4 residues within 4Å: Chain E: N.32, T.34, T.313 Chain F: L.52 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Structural Analysis of the Hemagglutinin from the Recent 2013 H7N9 Influenza Virus. J.Virol. (2013)

Release Date

2013-10-02

Peptides

Hemagglutinin: ACE
Hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

C
I

E
K

B
H

D
J

F
L

Hemagglutinin

Hemagglutinin

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