SMTL ID : 4ln8.3 (7 other biounits)

The crystal structure of hemagglutinin from a h7n9 influenza virus (a/shanghai/2/2013) in complex with lstb

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.1: 4 residues within 4Å: Chain A: N.16, T.18, N.32 Ligands: NAG-NAG-BMA.2 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 4 residues within 4Å: Chain A: N.32, T.34, T.313 Ligands: NAG-NAG-BMA-FUC.1 No protein-ligand interaction detected (PLIP)

1 x NAG- GAL- SIA: beta-D-galactopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-GAL-SIA.3: 13 residues within 4Å: Chain A: Y.92, A.129, T.130, S.131, W.146, L.148, H.178, V.181, E.185, K.188, L.189, L.221, G.223 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.185, A:E.185, A:Y.92, A:A.129, A:T.130, A:S.131, A:H.178 Hydrophobic interactions: A:L.189 Water bridges: A:A.129, A:A.129

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 3 residues within 4Å: Chain A: E.75, D.113, K.114 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.75, A:D.113, A:K.114

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 2 residues within 4Å: Chain B: N.79, N.82 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Structural Analysis of the Hemagglutinin from the Recent 2013 H7N9 Influenza Virus. J.Virol. (2013)

Release Date

2013-10-02

Peptides

Hemagglutinin: A
Hemagglutinin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Hemagglutinin

Hemagglutinin

Related Entries With Identical Sequence