SMTL ID : 4lom.1

Crystal Structure of Mycobacterium tuberculosis HisB in complex with its substrate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-24-mer

Ligands

24 x IYP: (2R,3S)-2,3-dihydroxy-3-(1H-imidazol-5-yl)propyl dihydrogen phosphate(Non-covalent)

IYP.1: 15 residues within 4Å: Chain A: H.53, H.61, M.113, H.182, H.183, E.186, K.190 Chain J: R.105, R.127 Chain O: E.27, H.79, H.80, E.83 Ligands: MN.3, MN.58 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain J Salt bridges: A:K.190, J:R.105 Hydrogen bonds: J:R.127 Water bridges: J:R.127 IYP.5: 15 residues within 4Å: Chain B: H.53, H.61, M.113, H.182, H.183, E.186, K.190 Chain K: R.105, R.127 Chain P: E.27, H.79, H.80, E.83 Ligands: MN.7, MN.62 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain K Salt bridges: B:K.190, K:R.105 Hydrogen bonds: K:R.127 Water bridges: K:R.127 IYP.9: 15 residues within 4Å: Chain C: H.53, H.61, M.113, H.182, H.183, E.186, K.190 Chain I: R.105, R.127 Chain N: E.27, H.79, H.80, E.83 Ligands: MN.11, MN.54 4 PLIP interactions: 3 interactions with chain I, 1 interactions with chain C Hydrogen bonds: I:R.127 Water bridges: I:R.127 Salt bridges: I:R.105, C:K.190 IYP.13: 15 residues within 4Å: Chain D: H.53, H.61, M.113, H.182, H.183, E.186, K.190 Chain L: R.105, R.127 Chain M: E.27, H.79, H.80, E.83 Ligands: MN.15, MN.50 4 PLIP interactions: 3 interactions with chain L, 1 interactions with chain D Hydrogen bonds: L:R.127 Water bridges: L:R.127 Salt bridges: L:R.105, D:K.190 IYP.17: 15 residues within 4Å: Chain B: R.105, R.127 Chain E: H.53, H.61, M.113, H.182, H.183, E.186, K.190 Chain U: E.27, H.79, H.80, E.83 Ligands: MN.19, MN.82 4 PLIP interactions: 1 interactions with chain E, 3 interactions with chain B Salt bridges: E:K.190, B:R.105 Hydrogen bonds: B:R.127 Water bridges: B:R.127 IYP.21: 15 residues within 4Å: Chain C: R.105, R.127 Chain F: H.53, H.61, M.113, H.182, H.183, E.186, K.190 Chain V: E.27, H.79, H.80, E.83 Ligands: MN.23, MN.86 4 PLIP interactions: 1 interactions with chain F, 3 interactions with chain C Salt bridges: F:K.190, C:R.105 Hydrogen bonds: C:R.127 Water bridges: C:R.127 IYP.25: 15 residues within 4Å: Chain A: R.105, R.127 Chain G: H.53, H.61, M.113, H.182, H.183, E.186, K.190 Chain X: E.27, H.79, H.80, E.83 Ligands: MN.27, MN.94 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain G Hydrogen bonds: A:R.127 Water bridges: A:R.127 Salt bridges: A:R.105, G:K.190 IYP.29: 15 residues within 4Å: Chain D: R.105, R.127 Chain H: H.53, H.61, M.113, H.182, H.183, E.186, K.190 Chain W: E.27, H.79, H.80, E.83 Ligands: MN.31, MN.90 5 PLIP interactions: 2 interactions with chain H, 3 interactions with chain D Hydrogen bonds: H:H.182, D:R.127 Salt bridges: H:K.190, D:R.105 Water bridges: D:R.127 IYP.33: 15 residues within 4Å: Chain F: R.105, R.127 Chain I: H.53, H.61, M.113, H.182, H.183, E.186, K.190 Chain R: E.27, H.79, H.80, E.83 Ligands: MN.35, MN.70 4 PLIP interactions: 3 interactions with chain F, 1 interactions with chain I Hydrogen bonds: F:R.127 Water bridges: F:R.127 Salt bridges: F:R.105, I:K.190 IYP.37: 15 residues within 4Å: Chain G: R.105, R.127 Chain J: H.53, H.61, M.113, H.182, H.183, E.186, K.190 Chain Q: E.27, H.79, H.80, E.83 Ligands: MN.39, MN.66 4 PLIP interactions: 3 interactions with chain G, 1 interactions with chain J Hydrogen bonds: G:R.127 Water bridges: G:R.127 Salt bridges: G:R.105, J:K.190 IYP.41: 15 residues within 4Å: Chain E: R.105, R.127 Chain K: H.53, H.61, M.113, H.182, H.183, E.186, K.190 Chain S: E.27, H.79, H.80, E.83 Ligands: MN.43, MN.74 4 PLIP interactions: 1 interactions with chain K, 3 interactions with chain E Salt bridges: K:K.190, E:R.105 Hydrogen bonds: E:R.127 Water bridges: E:R.127 IYP.45: 15 residues within 4Å: Chain H: R.105, R.127 Chain L: H.53, H.61, M.113, H.182, H.183, E.186, K.190 Chain T: E.27, H.79, H.80, E.83 Ligands: MN.47, MN.78 5 PLIP interactions: 2 interactions with chain L, 3 interactions with chain H Hydrogen bonds: L:H.182, H:R.127 Salt bridges: L:K.190, H:R.105 Water bridges: H:R.127 IYP.49: 15 residues within 4Å: Chain C: E.27, H.79, H.80, E.83 Chain M: H.53, H.61, M.113, H.182, H.183, E.186, K.190 Chain V: R.105, R.127 Ligands: MN.10, MN.51 4 PLIP interactions: 1 interactions with chain M, 3 interactions with chain V Salt bridges: M:K.190, V:R.105 Hydrogen bonds: V:R.127 Water bridges: V:R.127 IYP.53: 15 residues within 4Å: Chain D: E.27, H.79, H.80, E.83 Chain N: H.53, H.61, M.113, H.182, H.183, E.186, K.190 Chain W: R.105, R.127 Ligands: MN.14, MN.55 4 PLIP interactions: 1 interactions with chain N, 3 interactions with chain W Salt bridges: N:K.190, W:R.105 Hydrogen bonds: W:R.127 Water bridges: W:R.127 IYP.57: 15 residues within 4Å: Chain B: E.27, H.79, H.80, E.83 Chain O: H.53, H.61, M.113, H.182, H.183, E.186, K.190 Chain U: R.105, R.127 Ligands: MN.6, MN.59 4 PLIP interactions: 3 interactions with chain U, 1 interactions with chain O Hydrogen bonds: U:R.127 Water bridges: U:R.127 Salt bridges: U:R.105, O:K.190 IYP.61: 15 residues within 4Å: Chain A: E.27, H.79, H.80, E.83 Chain P: H.53, H.61, M.113, H.182, H.183, E.186, K.190 Chain X: R.105, R.127 Ligands: MN.2, MN.63 4 PLIP interactions: 3 interactions with chain X, 1 interactions with chain P Hydrogen bonds: X:R.127 Water bridges: X:R.127 Salt bridges: X:R.105, P:K.190 IYP.65: 15 residues within 4Å: Chain I: E.27, H.79, H.80, E.83 Chain N: R.105, R.127 Chain Q: H.53, H.61, M.113, H.182, H.183, E.186, K.190 Ligands: MN.34, MN.67 4 PLIP interactions: 3 interactions with chain N, 1 interactions with chain Q Hydrogen bonds: N:R.127 Water bridges: N:R.127 Salt bridges: N:R.105, Q:K.190 IYP.69: 15 residues within 4Å: Chain J: E.27, H.79, H.80, E.83 Chain O: R.105, R.127 Chain R: H.53, H.61, M.113, H.182, H.183, E.186, K.190 Ligands: MN.38, MN.71 4 PLIP interactions: 1 interactions with chain R, 3 interactions with chain O Salt bridges: R:K.190, O:R.105 Hydrogen bonds: O:R.127 Water bridges: O:R.127 IYP.73: 15 residues within 4Å: Chain L: E.27, H.79, H.80, E.83 Chain M: R.105, R.127 Chain S: H.53, H.61, M.113, H.182, H.183, E.186, K.190 Ligands: MN.46, MN.75 4 PLIP interactions: 1 interactions with chain S, 3 interactions with chain M Salt bridges: S:K.190, M:R.105 Hydrogen bonds: M:R.127 Water bridges: M:R.127 IYP.77: 15 residues within 4Å: Chain K: E.27, H.79, H.80, E.83 Chain P: R.105, R.127 Chain T: H.53, H.61, M.113, H.182, H.183, E.186, K.190 Ligands: MN.42, MN.79 4 PLIP interactions: 3 interactions with chain P, 1 interactions with chain T Hydrogen bonds: P:R.127 Water bridges: P:R.127 Salt bridges: P:R.105, T:K.190 IYP.81: 15 residues within 4Å: Chain F: E.27, H.79, H.80, E.83 Chain R: R.105, R.127 Chain U: H.53, H.61, M.113, H.182, H.183, E.186, K.190 Ligands: MN.22, MN.83 4 PLIP interactions: 3 interactions with chain R, 1 interactions with chain U Hydrogen bonds: R:R.127 Water bridges: R:R.127 Salt bridges: R:R.105, U:K.190 IYP.85: 15 residues within 4Å: Chain E: E.27, H.79, H.80, E.83 Chain S: R.105, R.127 Chain V: H.53, H.61, M.113, H.182, H.183, E.186, K.190 Ligands: MN.18, MN.87 4 PLIP interactions: 3 interactions with chain S, 1 interactions with chain V Hydrogen bonds: S:R.127 Water bridges: S:R.127 Salt bridges: S:R.105, V:K.190 IYP.89: 15 residues within 4Å: Chain G: E.27, H.79, H.80, E.83 Chain Q: R.105, R.127 Chain W: H.53, H.61, M.113, H.182, H.183, E.186, K.190 Ligands: MN.26, MN.91 5 PLIP interactions: 2 interactions with chain W, 3 interactions with chain Q Hydrogen bonds: W:H.182, Q:R.127 Salt bridges: W:K.190, Q:R.105 Water bridges: Q:R.127 IYP.93: 15 residues within 4Å: Chain H: E.27, H.79, H.80, E.83 Chain T: R.105, R.127 Chain X: H.53, H.61, M.113, H.182, H.183, E.186, K.190 Ligands: MN.30, MN.95 4 PLIP interactions: 1 interactions with chain X, 3 interactions with chain T Salt bridges: X:K.190, T:R.105 Hydrogen bonds: T:R.127 Water bridges: T:R.127

72 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 5 residues within 4Å: Chain A: H.79, E.83, H.158 Chain P: H.183 Ligands: IYP.61 5 PLIP interactions: 3 interactions with chain A, 1 interactions with chain P, 1 Ligand-Water interactions Metal complexes: A:H.79, A:E.83, A:H.158, P:H.183, H2O.3 MN.3: 5 residues within 4Å: Chain A: H.53, H.182, E.186 Chain O: H.80 Ligands: IYP.1 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain O Metal complexes: A:H.53, A:H.182, A:E.186, O:H.80 MN.4: 8 residues within 4Å: Chain A: F.110, R.174 Chain G: F.110, R.174 Chain J: F.110, R.174 Ligands: MN.28, MN.40 No protein-ligand interaction detected (PLIP) MN.6: 5 residues within 4Å: Chain B: H.79, E.83, H.158 Chain O: H.183 Ligands: IYP.57 5 PLIP interactions: 1 interactions with chain O, 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: O:H.183, B:H.79, B:E.83, B:H.158, H2O.6 MN.7: 5 residues within 4Å: Chain B: H.53, H.182, E.186 Chain P: H.80 Ligands: IYP.5 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain P Metal complexes: B:H.53, B:H.182, B:E.186, P:H.80 MN.8: 8 residues within 4Å: Chain B: F.110, R.174 Chain E: F.110, R.174 Chain K: F.110, R.174 Ligands: MN.20, MN.44 No protein-ligand interaction detected (PLIP) MN.10: 5 residues within 4Å: Chain C: H.79, E.83, H.158 Chain M: H.183 Ligands: IYP.49 5 PLIP interactions: 1 interactions with chain M, 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: M:H.183, C:H.79, C:E.83, C:H.158, H2O.8 MN.11: 5 residues within 4Å: Chain C: H.53, H.182, E.186 Chain N: H.80 Ligands: IYP.9 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain N Metal complexes: C:H.53, C:H.182, C:E.186, N:H.80 MN.12: 8 residues within 4Å: Chain C: F.110, R.174 Chain F: F.110, R.174 Chain I: F.110, R.174 Ligands: MN.24, MN.36 No protein-ligand interaction detected (PLIP) MN.14: 5 residues within 4Å: Chain D: H.79, E.83, H.158 Chain N: H.183 Ligands: IYP.53 5 PLIP interactions: 3 interactions with chain D, 1 interactions with chain N, 1 Ligand-Water interactions Metal complexes: D:H.79, D:E.83, D:H.158, N:H.183, H2O.11 MN.15: 5 residues within 4Å: Chain D: H.53, H.182, E.186 Chain M: H.80 Ligands: IYP.13 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain M Metal complexes: D:H.53, D:H.182, D:E.186, M:H.80 MN.16: 8 residues within 4Å: Chain D: F.110, R.174 Chain H: F.110, R.174 Chain L: F.110, R.174 Ligands: MN.32, MN.48 No protein-ligand interaction detected (PLIP) MN.18: 5 residues within 4Å: Chain E: H.79, E.83, H.158 Chain V: H.183 Ligands: IYP.85 5 PLIP interactions: 3 interactions with chain E, 1 interactions with chain V, 1 Ligand-Water interactions Metal complexes: E:H.79, E:E.83, E:H.158, V:H.183, H2O.14 MN.19: 5 residues within 4Å: Chain E: H.53, H.182, E.186 Chain U: H.80 Ligands: IYP.17 4 PLIP interactions: 1 interactions with chain U, 3 interactions with chain E Metal complexes: U:H.80, E:H.53, E:H.182, E:E.186 MN.20: 8 residues within 4Å: Chain B: F.110, R.174 Chain E: F.110, R.174 Chain K: F.110, R.174 Ligands: MN.8, MN.44 No protein-ligand interaction detected (PLIP) MN.22: 5 residues within 4Å: Chain F: H.79, E.83, H.158 Chain U: H.183 Ligands: IYP.81 5 PLIP interactions: 1 interactions with chain U, 3 interactions with chain F, 1 Ligand-Water interactions Metal complexes: U:H.183, F:H.79, F:E.83, F:H.158, H2O.17 MN.23: 5 residues within 4Å: Chain F: H.53, H.182, E.186 Chain V: H.80 Ligands: IYP.21 4 PLIP interactions: 3 interactions with chain F, 1 interactions with chain V Metal complexes: F:H.53, F:H.182, F:E.186, V:H.80 MN.24: 8 residues within 4Å: Chain C: F.110, R.174 Chain F: F.110, R.174 Chain I: F.110, R.174 Ligands: MN.12, MN.36 No protein-ligand interaction detected (PLIP) MN.26: 5 residues within 4Å: Chain G: H.79, E.83, H.158 Chain W: H.183 Ligands: IYP.89 5 PLIP interactions: 3 interactions with chain G, 1 interactions with chain W, 1 Ligand-Water interactions Metal complexes: G:H.79, G:E.83, G:H.158, W:H.183, H2O.20 MN.27: 5 residues within 4Å: Chain G: H.53, H.182, E.186 Chain X: H.80 Ligands: IYP.25 4 PLIP interactions: 1 interactions with chain X, 3 interactions with chain G Metal complexes: X:H.80, G:H.53, G:H.182, G:E.186 MN.28: 8 residues within 4Å: Chain A: F.110, R.174 Chain G: F.110, R.174 Chain J: F.110, R.174 Ligands: MN.4, MN.40 No protein-ligand interaction detected (PLIP) MN.30: 5 residues within 4Å: Chain H: H.79, E.83, H.158 Chain X: H.183 Ligands: IYP.93 5 PLIP interactions: 3 interactions with chain H, 1 interactions with chain X, 1 Ligand-Water interactions Metal complexes: H:H.79, H:E.83, H:H.158, X:H.183, H2O.22 MN.31: 5 residues within 4Å: Chain H: H.53, H.182, E.186 Chain W: H.80 Ligands: IYP.29 4 PLIP interactions: 3 interactions with chain H, 1 interactions with chain W Metal complexes: H:H.53, H:H.182, H:E.186, W:H.80 MN.32: 8 residues within 4Å: Chain D: F.110, R.174 Chain H: F.110, R.174 Chain L: F.110, R.174 Ligands: MN.16, MN.48 No protein-ligand interaction detected (PLIP) MN.34: 5 residues within 4Å: Chain I: H.79, E.83, H.158 Chain Q: H.183 Ligands: IYP.65 5 PLIP interactions: 1 interactions with chain Q, 3 interactions with chain I, 1 Ligand-Water interactions Metal complexes: Q:H.183, I:H.79, I:E.83, I:H.158, H2O.25 MN.35: 5 residues within 4Å: Chain I: H.53, H.182, E.186 Chain R: H.80 Ligands: IYP.33 4 PLIP interactions: 1 interactions with chain R, 3 interactions with chain I Metal complexes: R:H.80, I:H.53, I:H.182, I:E.186 MN.36: 8 residues within 4Å: Chain C: F.110, R.174 Chain F: F.110, R.174 Chain I: F.110, R.174 Ligands: MN.12, MN.24 No protein-ligand interaction detected (PLIP) MN.38: 5 residues within 4Å: Chain J: H.79, E.83, H.158 Chain R: H.183 Ligands: IYP.69 5 PLIP interactions: 3 interactions with chain J, 1 interactions with chain R, 1 Ligand-Water interactions Metal complexes: J:H.79, J:E.83, J:H.158, R:H.183, H2O.28 MN.39: 5 residues within 4Å: Chain J: H.53, H.182, E.186 Chain Q: H.80 Ligands: IYP.37 4 PLIP interactions: 3 interactions with chain J, 1 interactions with chain Q Metal complexes: J:H.53, J:H.182, J:E.186, Q:H.80 MN.40: 8 residues within 4Å: Chain A: F.110, R.174 Chain G: F.110, R.174 Chain J: F.110, R.174 Ligands: MN.4, MN.28 No protein-ligand interaction detected (PLIP) MN.42: 5 residues within 4Å: Chain K: H.79, E.83, H.158 Chain T: H.183 Ligands: IYP.77 5 PLIP interactions: 3 interactions with chain K, 1 interactions with chain T, 1 Ligand-Water interactions Metal complexes: K:H.79, K:E.83, K:H.158, T:H.183, H2O.31 MN.43: 5 residues within 4Å: Chain K: H.53, H.182, E.186 Chain S: H.80 Ligands: IYP.41 4 PLIP interactions: 3 interactions with chain K, 1 interactions with chain S Metal complexes: K:H.53, K:H.182, K:E.186, S:H.80 MN.44: 8 residues within 4Å: Chain B: F.110, R.174 Chain E: F.110, R.174 Chain K: F.110, R.174 Ligands: MN.8, MN.20 No protein-ligand interaction detected (PLIP) MN.46: 5 residues within 4Å: Chain L: H.79, E.83, H.158 Chain S: H.183 Ligands: IYP.73 5 PLIP interactions: 3 interactions with chain L, 1 interactions with chain S, 1 Ligand-Water interactions Metal complexes: L:H.79, L:E.83, L:H.158, S:H.183, H2O.34 MN.47: 5 residues within 4Å: Chain L: H.53, H.182, E.186 Chain T: H.80 Ligands: IYP.45 4 PLIP interactions: 3 interactions with chain L, 1 interactions with chain T Metal complexes: L:H.53, L:H.182, L:E.186, T:H.80 MN.48: 8 residues within 4Å: Chain D: F.110, R.174 Chain H: F.110, R.174 Chain L: F.110, R.174 Ligands: MN.16, MN.32 No protein-ligand interaction detected (PLIP) MN.50: 5 residues within 4Å: Chain D: H.183 Chain M: H.79, E.83, H.158 Ligands: IYP.13 5 PLIP interactions: 1 interactions with chain D, 3 interactions with chain M, 1 Ligand-Water interactions Metal complexes: D:H.183, M:H.79, M:E.83, M:H.158, H2O.36 MN.51: 5 residues within 4Å: Chain C: H.80 Chain M: H.53, H.182, E.186 Ligands: IYP.49 4 PLIP interactions: 3 interactions with chain M, 1 interactions with chain C Metal complexes: M:H.53, M:H.182, M:E.186, C:H.80 MN.52: 8 residues within 4Å: Chain M: F.110, R.174 Chain S: F.110, R.174 Chain V: F.110, R.174 Ligands: MN.76, MN.88 No protein-ligand interaction detected (PLIP) MN.54: 5 residues within 4Å: Chain C: H.183 Chain N: H.79, E.83, H.158 Ligands: IYP.9 5 PLIP interactions: 3 interactions with chain N, 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: N:H.79, N:E.83, N:H.158, C:H.183, H2O.39 MN.55: 5 residues within 4Å: Chain D: H.80 Chain N: H.53, H.182, E.186 Ligands: IYP.53 4 PLIP interactions: 3 interactions with chain N, 1 interactions with chain D Metal complexes: N:H.53, N:H.182, N:E.186, D:H.80 MN.56: 8 residues within 4Å: Chain N: F.110, R.174 Chain Q: F.110, R.174 Chain W: F.110, R.174 Ligands: MN.68, MN.92 No protein-ligand interaction detected (PLIP) MN.58: 5 residues within 4Å: Chain A: H.183 Chain O: H.79, E.83, H.158 Ligands: IYP.1 5 PLIP interactions: 3 interactions with chain O, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: O:H.79, O:E.83, O:H.158, A:H.183, H2O.42 MN.59: 5 residues within 4Å: Chain B: H.80 Chain O: H.53, H.182, E.186 Ligands: IYP.57 4 PLIP interactions: 3 interactions with chain O, 1 interactions with chain B Metal complexes: O:H.53, O:H.182, O:E.186, B:H.80 MN.60: 8 residues within 4Å: Chain O: F.110, R.174 Chain R: F.110, R.174 Chain U: F.110, R.174 Ligands: MN.72, MN.84 No protein-ligand interaction detected (PLIP) MN.62: 5 residues within 4Å: Chain B: H.183 Chain P: H.79, E.83, H.158 Ligands: IYP.5 5 PLIP interactions: 1 interactions with chain B, 3 interactions with chain P, 1 Ligand-Water interactions Metal complexes: B:H.183, P:H.79, P:E.83, P:H.158, H2O.45 MN.63: 5 residues within 4Å: Chain A: H.80 Chain P: H.53, H.182, E.186 Ligands: IYP.61 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain P Metal complexes: A:H.80, P:H.53, P:H.182, P:E.186 MN.64: 8 residues within 4Å: Chain P: F.110, R.174 Chain T: F.110, R.174 Chain X: F.110, R.174 Ligands: MN.80, MN.96 No protein-ligand interaction detected (PLIP) MN.66: 5 residues within 4Å: Chain J: H.183 Chain Q: H.79, E.83, H.158 Ligands: IYP.37 5 PLIP interactions: 3 interactions with chain Q, 1 interactions with chain J, 1 Ligand-Water interactions Metal complexes: Q:H.79, Q:E.83, Q:H.158, J:H.183, H2O.48 MN.67: 5 residues within 4Å: Chain I: H.80 Chain Q: H.53, H.182, E.186 Ligands: IYP.65 4 PLIP interactions: 3 interactions with chain Q, 1 interactions with chain I Metal complexes: Q:H.53, Q:H.182, Q:E.186, I:H.80 MN.68: 8 residues within 4Å: Chain N: F.110, R.174 Chain Q: F.110, R.174 Chain W: F.110, R.174 Ligands: MN.56, MN.92 No protein-ligand interaction detected (PLIP) MN.70: 5 residues within 4Å: Chain I: H.183 Chain R: H.79, E.83, H.158 Ligands: IYP.33 5 PLIP interactions: 3 interactions with chain R, 1 interactions with chain I, 1 Ligand-Water interactions Metal complexes: R:H.79, R:E.83, R:H.158, I:H.183, H2O.51 MN.71: 5 residues within 4Å: Chain J: H.80 Chain R: H.53, H.182, E.186 Ligands: IYP.69 4 PLIP interactions: 3 interactions with chain R, 1 interactions with chain J Metal complexes: R:H.53, R:H.182, R:E.186, J:H.80 MN.72: 8 residues within 4Å: Chain O: F.110, R.174 Chain R: F.110, R.174 Chain U: F.110, R.174 Ligands: MN.60, MN.84 No protein-ligand interaction detected (PLIP) MN.74: 5 residues within 4Å: Chain K: H.183 Chain S: H.79, E.83, H.158 Ligands: IYP.41 5 PLIP interactions: 3 interactions with chain S, 1 interactions with chain K, 1 Ligand-Water interactions Metal complexes: S:H.79, S:E.83, S:H.158, K:H.183, H2O.53 MN.75: 5 residues within 4Å: Chain L: H.80 Chain S: H.53, H.182, E.186 Ligands: IYP.73 4 PLIP interactions: 3 interactions with chain S, 1 interactions with chain L Metal complexes: S:H.53, S:H.182, S:E.186, L:H.80 MN.76: 8 residues within 4Å: Chain M: F.110, R.174 Chain S: F.110, R.174 Chain V: F.110, R.174 Ligands: MN.52, MN.88 No protein-ligand interaction detected (PLIP) MN.78: 5 residues within 4Å: Chain L: H.183 Chain T: H.79, E.83, H.158 Ligands: IYP.45 5 PLIP interactions: 3 interactions with chain T, 1 interactions with chain L, 1 Ligand-Water interactions Metal complexes: T:H.79, T:E.83, T:H.158, L:H.183, H2O.56 MN.79: 5 residues within 4Å: Chain K: H.80 Chain T: H.53, H.182, E.186 Ligands: IYP.77 4 PLIP interactions: 3 interactions with chain T, 1 interactions with chain K Metal complexes: T:H.53, T:H.182, T:E.186, K:H.80 MN.80: 8 residues within 4Å: Chain P: F.110, R.174 Chain T: F.110, R.174 Chain X: F.110, R.174 Ligands: MN.64, MN.96 No protein-ligand interaction detected (PLIP) MN.82: 5 residues within 4Å: Chain E: H.183 Chain U: H.79, E.83, H.158 Ligands: IYP.17 5 PLIP interactions: 3 interactions with chain U, 1 interactions with chain E, 1 Ligand-Water interactions Metal complexes: U:H.79, U:E.83, U:H.158, E:H.183, H2O.59 MN.83: 5 residues within 4Å: Chain F: H.80 Chain U: H.53, H.182, E.186 Ligands: IYP.81 4 PLIP interactions: 1 interactions with chain F, 3 interactions with chain U Metal complexes: F:H.80, U:H.53, U:H.182, U:E.186 MN.84: 8 residues within 4Å: Chain O: F.110, R.174 Chain R: F.110, R.174 Chain U: F.110, R.174 Ligands: MN.60, MN.72 No protein-ligand interaction detected (PLIP) MN.86: 5 residues within 4Å: Chain F: H.183 Chain V: H.79, E.83, H.158 Ligands: IYP.21 5 PLIP interactions: 1 interactions with chain F, 3 interactions with chain V, 1 Ligand-Water interactions Metal complexes: F:H.183, V:H.79, V:E.83, V:H.158, H2O.62 MN.87: 5 residues within 4Å: Chain E: H.80 Chain V: H.53, H.182, E.186 Ligands: IYP.85 4 PLIP interactions: 1 interactions with chain E, 3 interactions with chain V Metal complexes: E:H.80, V:H.53, V:H.182, V:E.186 MN.88: 8 residues within 4Å: Chain M: F.110, R.174 Chain S: F.110, R.174 Chain V: F.110, R.174 Ligands: MN.52, MN.76 No protein-ligand interaction detected (PLIP) MN.90: 5 residues within 4Å: Chain H: H.183 Chain W: H.79, E.83, H.158 Ligands: IYP.29 5 PLIP interactions: 1 interactions with chain H, 3 interactions with chain W, 1 Ligand-Water interactions Metal complexes: H:H.183, W:H.79, W:E.83, W:H.158, H2O.65 MN.91: 5 residues within 4Å: Chain G: H.80 Chain W: H.53, H.182, E.186 Ligands: IYP.89 4 PLIP interactions: 3 interactions with chain W, 1 interactions with chain G Metal complexes: W:H.53, W:H.182, W:E.186, G:H.80 MN.92: 8 residues within 4Å: Chain N: F.110, R.174 Chain Q: F.110, R.174 Chain W: F.110, R.174 Ligands: MN.56, MN.68 No protein-ligand interaction detected (PLIP) MN.94: 5 residues within 4Å: Chain G: H.183 Chain X: H.79, E.83, H.158 Ligands: IYP.25 5 PLIP interactions: 3 interactions with chain X, 1 interactions with chain G, 1 Ligand-Water interactions Metal complexes: X:H.79, X:E.83, X:H.158, G:H.183, H2O.67 MN.95: 5 residues within 4Å: Chain H: H.80 Chain X: H.53, H.182, E.186 Ligands: IYP.93 4 PLIP interactions: 3 interactions with chain X, 1 interactions with chain H Metal complexes: X:H.53, X:H.182, X:E.186, H:H.80 MN.96: 8 residues within 4Å: Chain P: F.110, R.174 Chain T: F.110, R.174 Chain X: F.110, R.174 Ligands: MN.64, MN.80 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ahangar, M.S. et al., Crystal structures of the native, substrate- bound and inhibited forms of Mycobacterium tuberculosis imidazole glycerol phosphate dehydratase. Acta Crystallogr.,Sect.D (2013)

Release Date

2013-08-28

Peptides

Imidazoleglycerol-phosphate dehydratase: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

M
A

N
A

O
A

P
A

Q
A

R
A

S
A

T
A

U
A

V
A

W
A

X
A

Imidazoleglycerol-phosphate dehydratase

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