- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.28 Å
- Oligo State
- homo-24-mer
- Ligands
- 48 x MN: MANGANESE (II) ION(Non-covalent)
- 48 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 8 residues within 4Å:- Chain A: F.110, R.174
- Chain G: F.110, R.174
- Chain J: F.110, R.174
- Ligands: CL.39, CL.57
Ligand excluded by PLIPCL.4: 3 residues within 4Å:- Chain A: R.105
- Chain G: H.61, K.190
Ligand excluded by PLIPCL.9: 8 residues within 4Å:- Chain B: F.110, R.174
- Chain E: F.110, R.174
- Chain K: F.110, R.174
- Ligands: CL.27, CL.63
Ligand excluded by PLIPCL.10: 3 residues within 4Å:- Chain B: R.105
- Chain E: H.61, K.190
Ligand excluded by PLIPCL.15: 8 residues within 4Å:- Chain C: F.110, R.174
- Chain F: F.110, R.174
- Chain I: F.110, R.174
- Ligands: CL.33, CL.51
Ligand excluded by PLIPCL.16: 3 residues within 4Å:- Chain C: R.105
- Chain F: H.61, K.190
Ligand excluded by PLIPCL.21: 8 residues within 4Å:- Chain D: F.110, R.174
- Chain H: F.110, R.174
- Chain L: F.110, R.174
- Ligands: CL.45, CL.69
Ligand excluded by PLIPCL.22: 3 residues within 4Å:- Chain D: R.105
- Chain H: H.61, K.190
Ligand excluded by PLIPCL.27: 8 residues within 4Å:- Chain B: F.110, R.174
- Chain E: F.110, R.174
- Chain K: F.110, R.174
- Ligands: CL.9, CL.63
Ligand excluded by PLIPCL.28: 3 residues within 4Å:- Chain E: R.105
- Chain K: H.61, K.190
Ligand excluded by PLIPCL.33: 8 residues within 4Å:- Chain C: F.110, R.174
- Chain F: F.110, R.174
- Chain I: F.110, R.174
- Ligands: CL.15, CL.51
Ligand excluded by PLIPCL.34: 3 residues within 4Å:- Chain F: R.105
- Chain I: H.61, K.190
Ligand excluded by PLIPCL.39: 8 residues within 4Å:- Chain A: F.110, R.174
- Chain G: F.110, R.174
- Chain J: F.110, R.174
- Ligands: CL.3, CL.57
Ligand excluded by PLIPCL.40: 3 residues within 4Å:- Chain G: R.105
- Chain J: H.61, K.190
Ligand excluded by PLIPCL.45: 8 residues within 4Å:- Chain D: F.110, R.174
- Chain H: F.110, R.174
- Chain L: F.110, R.174
- Ligands: CL.21, CL.69
Ligand excluded by PLIPCL.46: 3 residues within 4Å:- Chain H: R.105
- Chain L: H.61, K.190
Ligand excluded by PLIPCL.51: 8 residues within 4Å:- Chain C: F.110, R.174
- Chain F: F.110, R.174
- Chain I: F.110, R.174
- Ligands: CL.15, CL.33
Ligand excluded by PLIPCL.52: 3 residues within 4Å:- Chain C: H.61, K.190
- Chain I: R.105
Ligand excluded by PLIPCL.57: 8 residues within 4Å:- Chain A: F.110, R.174
- Chain G: F.110, R.174
- Chain J: F.110, R.174
- Ligands: CL.3, CL.39
Ligand excluded by PLIPCL.58: 3 residues within 4Å:- Chain A: H.61, K.190
- Chain J: R.105
Ligand excluded by PLIPCL.63: 8 residues within 4Å:- Chain B: F.110, R.174
- Chain E: F.110, R.174
- Chain K: F.110, R.174
- Ligands: CL.9, CL.27
Ligand excluded by PLIPCL.64: 3 residues within 4Å:- Chain B: H.61, K.190
- Chain K: R.105
Ligand excluded by PLIPCL.69: 8 residues within 4Å:- Chain D: F.110, R.174
- Chain H: F.110, R.174
- Chain L: F.110, R.174
- Ligands: CL.21, CL.45
Ligand excluded by PLIPCL.70: 3 residues within 4Å:- Chain D: H.61, K.190
- Chain L: R.105
Ligand excluded by PLIPCL.75: 8 residues within 4Å:- Chain M: F.110, R.174
- Chain S: F.110, R.174
- Chain V: F.110, R.174
- Ligands: CL.111, CL.129
Ligand excluded by PLIPCL.76: 3 residues within 4Å:- Chain M: R.105
- Chain S: H.61, K.190
Ligand excluded by PLIPCL.81: 8 residues within 4Å:- Chain N: F.110, R.174
- Chain Q: F.110, R.174
- Chain W: F.110, R.174
- Ligands: CL.99, CL.135
Ligand excluded by PLIPCL.82: 3 residues within 4Å:- Chain N: R.105
- Chain Q: H.61, K.190
Ligand excluded by PLIPCL.87: 8 residues within 4Å:- Chain O: F.110, R.174
- Chain R: F.110, R.174
- Chain U: F.110, R.174
- Ligands: CL.105, CL.123
Ligand excluded by PLIPCL.88: 3 residues within 4Å:- Chain O: R.105
- Chain R: H.61, K.190
Ligand excluded by PLIPCL.93: 8 residues within 4Å:- Chain P: F.110, R.174
- Chain T: F.110, R.174
- Chain X: F.110, R.174
- Ligands: CL.117, CL.141
Ligand excluded by PLIPCL.94: 3 residues within 4Å:- Chain P: R.105
- Chain T: H.61, K.190
Ligand excluded by PLIPCL.99: 8 residues within 4Å:- Chain N: F.110, R.174
- Chain Q: F.110, R.174
- Chain W: F.110, R.174
- Ligands: CL.81, CL.135
Ligand excluded by PLIPCL.100: 3 residues within 4Å:- Chain Q: R.105
- Chain W: H.61, K.190
Ligand excluded by PLIPCL.105: 8 residues within 4Å:- Chain O: F.110, R.174
- Chain R: F.110, R.174
- Chain U: F.110, R.174
- Ligands: CL.87, CL.123
Ligand excluded by PLIPCL.106: 3 residues within 4Å:- Chain R: R.105
- Chain U: H.61, K.190
Ligand excluded by PLIPCL.111: 8 residues within 4Å:- Chain M: F.110, R.174
- Chain S: F.110, R.174
- Chain V: F.110, R.174
- Ligands: CL.75, CL.129
Ligand excluded by PLIPCL.112: 3 residues within 4Å:- Chain S: R.105
- Chain V: H.61, K.190
Ligand excluded by PLIPCL.117: 8 residues within 4Å:- Chain P: F.110, R.174
- Chain T: F.110, R.174
- Chain X: F.110, R.174
- Ligands: CL.93, CL.141
Ligand excluded by PLIPCL.118: 3 residues within 4Å:- Chain T: R.105
- Chain X: H.61, K.190
Ligand excluded by PLIPCL.123: 8 residues within 4Å:- Chain O: F.110, R.174
- Chain R: F.110, R.174
- Chain U: F.110, R.174
- Ligands: CL.87, CL.105
Ligand excluded by PLIPCL.124: 3 residues within 4Å:- Chain O: H.61, K.190
- Chain U: R.105
Ligand excluded by PLIPCL.129: 8 residues within 4Å:- Chain M: F.110, R.174
- Chain S: F.110, R.174
- Chain V: F.110, R.174
- Ligands: CL.75, CL.111
Ligand excluded by PLIPCL.130: 3 residues within 4Å:- Chain M: H.61, K.190
- Chain V: R.105
Ligand excluded by PLIPCL.135: 8 residues within 4Å:- Chain N: F.110, R.174
- Chain Q: F.110, R.174
- Chain W: F.110, R.174
- Ligands: CL.81, CL.99
Ligand excluded by PLIPCL.136: 3 residues within 4Å:- Chain N: H.61, K.190
- Chain W: R.105
Ligand excluded by PLIPCL.141: 8 residues within 4Å:- Chain P: F.110, R.174
- Chain T: F.110, R.174
- Chain X: F.110, R.174
- Ligands: CL.93, CL.117
Ligand excluded by PLIPCL.142: 3 residues within 4Å:- Chain P: H.61, K.190
- Chain X: R.105
Ligand excluded by PLIP- 24 x HB3: 2-(1H-1,2,4-triazol-5-ylsulfanyl)ethanamine(Non-covalent)
HB3.5: 11 residues within 4Å:- Chain A: E.27, H.79, H.80, E.83
- Chain P: M.113, H.182, H.183, E.186
- Chain X: R.127
- Ligands: MN.1, MN.92
3 PLIP interactions:1 interactions with chain P, 1 interactions with chain X, 1 interactions with chain A- Hydrogen bonds: P:E.186, A:E.27
- Water bridges: X:R.127
HB3.11: 11 residues within 4Å:- Chain B: E.27, H.79, H.80, E.83
- Chain O: M.113, H.182, H.183, E.186
- Chain U: R.127
- Ligands: MN.7, MN.86
3 PLIP interactions:1 interactions with chain B, 1 interactions with chain U, 1 interactions with chain O- Hydrogen bonds: B:E.27, O:E.186
- Water bridges: U:R.127
HB3.17: 11 residues within 4Å:- Chain C: E.27, H.79, H.80, E.83
- Chain M: M.113, H.182, H.183, E.186
- Chain V: R.127
- Ligands: MN.13, MN.74
4 PLIP interactions:1 interactions with chain V, 1 interactions with chain M, 2 interactions with chain C- Water bridges: V:R.127, C:E.27
- Hydrogen bonds: M:E.186, C:E.27
HB3.23: 11 residues within 4Å:- Chain D: E.27, H.79, H.80, E.83
- Chain N: M.113, H.182, H.183, E.186
- Chain W: R.127
- Ligands: MN.19, MN.80
4 PLIP interactions:1 interactions with chain N, 1 interactions with chain W, 2 interactions with chain D- Hydrogen bonds: N:E.186, D:E.27
- Water bridges: W:R.127, D:E.27
HB3.29: 11 residues within 4Å:- Chain E: E.27, H.79, H.80, E.83
- Chain S: R.127
- Chain V: M.113, H.182, H.183, E.186
- Ligands: MN.25, MN.128
4 PLIP interactions:1 interactions with chain S, 2 interactions with chain E, 1 interactions with chain V- Water bridges: S:R.127, E:E.27
- Hydrogen bonds: E:E.27, V:E.186
HB3.35: 11 residues within 4Å:- Chain F: E.27, H.79, H.80, E.83
- Chain R: R.127
- Chain U: M.113, H.182, H.183, E.186
- Ligands: MN.31, MN.122
3 PLIP interactions:1 interactions with chain R, 1 interactions with chain F, 1 interactions with chain U- Water bridges: R:R.127
- Hydrogen bonds: F:E.27, U:E.186
HB3.41: 11 residues within 4Å:- Chain G: E.27, H.79, H.80, E.83
- Chain Q: R.127
- Chain W: M.113, H.182, H.183, E.186
- Ligands: MN.37, MN.134
4 PLIP interactions:2 interactions with chain G, 1 interactions with chain W, 1 interactions with chain Q- Hydrogen bonds: G:E.27, W:E.186
- Water bridges: G:E.27, Q:R.127
HB3.47: 11 residues within 4Å:- Chain H: E.27, H.79, H.80, E.83
- Chain T: R.127
- Chain X: M.113, H.182, H.183, E.186
- Ligands: MN.43, MN.140
3 PLIP interactions:1 interactions with chain T, 1 interactions with chain H, 1 interactions with chain X- Water bridges: T:R.127
- Hydrogen bonds: H:E.27, X:E.186
HB3.53: 11 residues within 4Å:- Chain I: E.27, H.79, H.80, E.83
- Chain N: R.127
- Chain Q: M.113, H.182, H.183, E.186
- Ligands: MN.49, MN.98
3 PLIP interactions:1 interactions with chain I, 1 interactions with chain N, 1 interactions with chain Q- Hydrogen bonds: I:E.27, Q:E.186
- Water bridges: N:R.127
HB3.59: 11 residues within 4Å:- Chain J: E.27, H.79, H.80, E.83
- Chain O: R.127
- Chain R: M.113, H.182, H.183, E.186
- Ligands: MN.55, MN.104
4 PLIP interactions:1 interactions with chain O, 1 interactions with chain R, 2 interactions with chain J- Water bridges: O:R.127, J:E.27
- Hydrogen bonds: R:E.186, J:E.27
HB3.65: 11 residues within 4Å:- Chain K: E.27, H.79, H.80, E.83
- Chain P: R.127
- Chain T: M.113, H.182, H.183, E.186
- Ligands: MN.61, MN.116
4 PLIP interactions:1 interactions with chain T, 1 interactions with chain P, 2 interactions with chain K- Hydrogen bonds: T:E.186, K:E.27
- Water bridges: P:R.127, K:E.27
HB3.71: 11 residues within 4Å:- Chain L: E.27, H.79, H.80, E.83
- Chain M: R.127
- Chain S: M.113, H.182, H.183, E.186
- Ligands: MN.67, MN.110
3 PLIP interactions:1 interactions with chain S, 1 interactions with chain L, 1 interactions with chain M- Hydrogen bonds: S:E.186, L:E.27
- Water bridges: M:R.127
HB3.77: 11 residues within 4Å:- Chain D: M.113, H.182, H.183, E.186
- Chain L: R.127
- Chain M: E.27, H.79, H.80, E.83
- Ligands: MN.20, MN.73
4 PLIP interactions:1 interactions with chain D, 1 interactions with chain L, 2 interactions with chain M- Hydrogen bonds: D:E.186, M:E.27
- Water bridges: L:R.127, M:E.27
HB3.83: 11 residues within 4Å:- Chain C: M.113, H.182, H.183, E.186
- Chain I: R.127
- Chain N: E.27, H.79, H.80, E.83
- Ligands: MN.14, MN.79
4 PLIP interactions:1 interactions with chain C, 2 interactions with chain N, 1 interactions with chain I- Hydrogen bonds: C:E.186, N:E.27
- Water bridges: N:E.27, I:R.127
HB3.89: 11 residues within 4Å:- Chain A: M.113, H.182, H.183, E.186
- Chain J: R.127
- Chain O: E.27, H.79, H.80, E.83
- Ligands: MN.2, MN.85
3 PLIP interactions:1 interactions with chain A, 1 interactions with chain O, 1 interactions with chain J- Hydrogen bonds: A:E.186, O:E.27
- Water bridges: J:R.127
HB3.95: 11 residues within 4Å:- Chain B: M.113, H.182, H.183, E.186
- Chain K: R.127
- Chain P: E.27, H.79, H.80, E.83
- Ligands: MN.8, MN.91
3 PLIP interactions:1 interactions with chain P, 1 interactions with chain K, 1 interactions with chain B- Hydrogen bonds: P:E.27, B:E.186
- Water bridges: K:R.127
HB3.101: 11 residues within 4Å:- Chain G: R.127
- Chain J: M.113, H.182, H.183, E.186
- Chain Q: E.27, H.79, H.80, E.83
- Ligands: MN.56, MN.97
3 PLIP interactions:1 interactions with chain G, 1 interactions with chain J, 1 interactions with chain Q- Water bridges: G:R.127
- Hydrogen bonds: J:E.186, Q:E.27
HB3.107: 11 residues within 4Å:- Chain F: R.127
- Chain I: M.113, H.182, H.183, E.186
- Chain R: E.27, H.79, H.80, E.83
- Ligands: MN.50, MN.103
4 PLIP interactions:1 interactions with chain I, 1 interactions with chain F, 2 interactions with chain R- Hydrogen bonds: I:E.186, R:E.27
- Water bridges: F:R.127, R:E.27
HB3.113: 11 residues within 4Å:- Chain E: R.127
- Chain K: M.113, H.182, H.183, E.186
- Chain S: E.27, H.79, H.80, E.83
- Ligands: MN.62, MN.109
3 PLIP interactions:1 interactions with chain E, 1 interactions with chain S, 1 interactions with chain K- Water bridges: E:R.127
- Hydrogen bonds: S:E.27, K:E.186
HB3.119: 11 residues within 4Å:- Chain H: R.127
- Chain L: M.113, H.182, H.183, E.186
- Chain T: E.27, H.79, H.80, E.83
- Ligands: MN.68, MN.115
4 PLIP interactions:1 interactions with chain L, 2 interactions with chain T, 1 interactions with chain H- Hydrogen bonds: L:E.186, T:E.27
- Water bridges: T:E.27, H:R.127
HB3.125: 11 residues within 4Å:- Chain B: R.127
- Chain E: M.113, H.182, H.183, E.186
- Chain U: E.27, H.79, H.80, E.83
- Ligands: MN.26, MN.121
4 PLIP interactions:1 interactions with chain E, 2 interactions with chain U, 1 interactions with chain B- Hydrogen bonds: E:E.186, U:E.27
- Water bridges: U:E.27, B:R.127
HB3.131: 11 residues within 4Å:- Chain C: R.127
- Chain F: M.113, H.182, H.183, E.186
- Chain V: E.27, H.79, H.80, E.83
- Ligands: MN.32, MN.127
3 PLIP interactions:1 interactions with chain F, 1 interactions with chain V, 1 interactions with chain C- Hydrogen bonds: F:E.186, V:E.27
- Water bridges: C:R.127
HB3.137: 11 residues within 4Å:- Chain D: R.127
- Chain H: M.113, H.182, H.183, E.186
- Chain W: E.27, H.79, H.80, E.83
- Ligands: MN.44, MN.133
3 PLIP interactions:1 interactions with chain H, 1 interactions with chain W, 1 interactions with chain D- Hydrogen bonds: H:E.186, W:E.27
- Water bridges: D:R.127
HB3.143: 11 residues within 4Å:- Chain A: R.127
- Chain G: M.113, H.182, H.183, E.186
- Chain X: E.27, H.79, H.80, E.83
- Ligands: MN.38, MN.139
4 PLIP interactions:1 interactions with chain G, 1 interactions with chain A, 2 interactions with chain X- Hydrogen bonds: G:E.186, X:E.27
- Water bridges: A:R.127, X:E.27
- 24 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.6: 6 residues within 4Å:- Chain A: D.108, A.109, F.110
- Chain J: G.107, D.108, Q.198
Ligand excluded by PLIPEDO.12: 6 residues within 4Å:- Chain B: D.108, A.109, F.110
- Chain K: G.107, D.108, Q.198
Ligand excluded by PLIPEDO.18: 6 residues within 4Å:- Chain C: D.108, A.109, F.110
- Chain I: G.107, D.108, Q.198
Ligand excluded by PLIPEDO.24: 6 residues within 4Å:- Chain D: D.108, A.109, F.110
- Chain L: G.107, D.108, Q.198
Ligand excluded by PLIPEDO.30: 6 residues within 4Å:- Chain B: G.107, D.108, Q.198
- Chain E: D.108, A.109, F.110
Ligand excluded by PLIPEDO.36: 6 residues within 4Å:- Chain C: G.107, D.108, Q.198
- Chain F: D.108, A.109, F.110
Ligand excluded by PLIPEDO.42: 6 residues within 4Å:- Chain A: G.107, D.108, Q.198
- Chain G: D.108, A.109, F.110
Ligand excluded by PLIPEDO.48: 6 residues within 4Å:- Chain D: G.107, D.108, Q.198
- Chain H: D.108, A.109, F.110
Ligand excluded by PLIPEDO.54: 6 residues within 4Å:- Chain F: G.107, D.108, Q.198
- Chain I: D.108, A.109, F.110
Ligand excluded by PLIPEDO.60: 6 residues within 4Å:- Chain G: G.107, D.108, Q.198
- Chain J: D.108, A.109, F.110
Ligand excluded by PLIPEDO.66: 6 residues within 4Å:- Chain E: G.107, D.108, Q.198
- Chain K: D.108, A.109, F.110
Ligand excluded by PLIPEDO.72: 6 residues within 4Å:- Chain H: G.107, D.108, Q.198
- Chain L: D.108, A.109, F.110
Ligand excluded by PLIPEDO.78: 6 residues within 4Å:- Chain M: D.108, A.109, F.110
- Chain V: G.107, D.108, Q.198
Ligand excluded by PLIPEDO.84: 6 residues within 4Å:- Chain N: D.108, A.109, F.110
- Chain W: G.107, D.108, Q.198
Ligand excluded by PLIPEDO.90: 6 residues within 4Å:- Chain O: D.108, A.109, F.110
- Chain U: G.107, D.108, Q.198
Ligand excluded by PLIPEDO.96: 6 residues within 4Å:- Chain P: D.108, A.109, F.110
- Chain X: G.107, D.108, Q.198
Ligand excluded by PLIPEDO.102: 6 residues within 4Å:- Chain N: G.107, D.108, Q.198
- Chain Q: D.108, A.109, F.110
Ligand excluded by PLIPEDO.108: 6 residues within 4Å:- Chain O: G.107, D.108, Q.198
- Chain R: D.108, A.109, F.110
Ligand excluded by PLIPEDO.114: 6 residues within 4Å:- Chain M: G.107, D.108, Q.198
- Chain S: D.108, A.109, F.110
Ligand excluded by PLIPEDO.120: 6 residues within 4Å:- Chain P: G.107, D.108, Q.198
- Chain T: D.108, A.109, F.110
Ligand excluded by PLIPEDO.126: 6 residues within 4Å:- Chain R: G.107, D.108, Q.198
- Chain U: D.108, A.109, F.110
Ligand excluded by PLIPEDO.132: 6 residues within 4Å:- Chain S: G.107, D.108, Q.198
- Chain V: D.108, A.109, F.110
Ligand excluded by PLIPEDO.138: 6 residues within 4Å:- Chain Q: G.107, D.108, Q.198
- Chain W: D.108, A.109, F.110
Ligand excluded by PLIPEDO.144: 6 residues within 4Å:- Chain T: G.107, D.108, Q.198
- Chain X: D.108, A.109, F.110
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tiwari, S. et al., Crystal structure of M.tuberculosis imidazole glycerol phosphate dehydratase in complex with an inhibitor. To Be Published
- Release Date
- 2021-12-22
- Peptides
- Imidazoleglycerol-phosphate dehydratase: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.28 Å
- Oligo State
- homo-24-mer
- Ligands
- 48 x MN: MANGANESE (II) ION(Non-covalent)
- 48 x CL: CHLORIDE ION(Non-functional Binders)
- 24 x HB3: 2-(1H-1,2,4-triazol-5-ylsulfanyl)ethanamine(Non-covalent)
- 24 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tiwari, S. et al., Crystal structure of M.tuberculosis imidazole glycerol phosphate dehydratase in complex with an inhibitor. To Be Published
- Release Date
- 2021-12-22
- Peptides
- Imidazoleglycerol-phosphate dehydratase: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A