- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-24-mer
- Ligands
- 24 x 3TR: 3-AMINO-1,2,4-TRIAZOLE(Non-covalent)
- 72 x MN: MANGANESE (II) ION(Non-covalent)
MN.2: 5 residues within 4Å:- Chain A: H.79, E.83, H.158
- Chain P: H.183
- Ligands: 3TR.1
5 PLIP interactions:3 interactions with chain A, 1 interactions with chain P, 1 Ligand-Water interactions- Metal complexes: A:H.79, A:E.83, A:H.158, P:H.183, H2O.1
MN.3: 5 residues within 4Å:- Chain A: H.53, H.182, E.186
- Chain O: H.80
- Ligands: 3TR.57
5 PLIP interactions:3 interactions with chain A, 1 interactions with chain O, 1 Ligand-Water interactions- Metal complexes: A:H.53, A:H.182, A:E.186, O:H.80, H2O.41
MN.4: 8 residues within 4Å:- Chain A: F.110, R.174
- Chain G: F.110, R.174
- Chain J: F.110, R.174
- Ligands: MN.28, MN.40
No protein-ligand interaction detected (PLIP)MN.6: 5 residues within 4Å:- Chain B: H.79, E.83, H.158
- Chain O: H.183
- Ligands: 3TR.5
5 PLIP interactions:1 interactions with chain O, 3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: O:H.183, B:H.79, B:E.83, B:H.158, H2O.4
MN.7: 5 residues within 4Å:- Chain B: H.53, H.182, E.186
- Chain P: H.80
- Ligands: 3TR.61
5 PLIP interactions:3 interactions with chain B, 1 interactions with chain P, 1 Ligand-Water interactions- Metal complexes: B:H.53, B:H.182, B:E.186, P:H.80, H2O.43
MN.8: 8 residues within 4Å:- Chain B: F.110, R.174
- Chain E: F.110, R.174
- Chain K: F.110, R.174
- Ligands: MN.20, MN.44
No protein-ligand interaction detected (PLIP)MN.10: 5 residues within 4Å:- Chain C: H.79, E.83, H.158
- Chain M: H.183
- Ligands: 3TR.9
5 PLIP interactions:1 interactions with chain M, 3 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: M:H.183, C:H.79, C:E.83, C:H.158, H2O.7
MN.11: 5 residues within 4Å:- Chain C: H.53, H.182, E.186
- Chain N: H.80
- Ligands: 3TR.53
5 PLIP interactions:3 interactions with chain C, 1 interactions with chain N, 1 Ligand-Water interactions- Metal complexes: C:H.53, C:H.182, C:E.186, N:H.80, H2O.38
MN.12: 8 residues within 4Å:- Chain C: F.110, R.174
- Chain F: F.110, R.174
- Chain I: F.110, R.174
- Ligands: MN.24, MN.36
No protein-ligand interaction detected (PLIP)MN.14: 5 residues within 4Å:- Chain D: H.79, E.83, H.158
- Chain N: H.183
- Ligands: 3TR.13
5 PLIP interactions:3 interactions with chain D, 1 interactions with chain N, 1 Ligand-Water interactions- Metal complexes: D:H.79, D:E.83, D:H.158, N:H.183, H2O.10
MN.15: 5 residues within 4Å:- Chain D: H.53, H.182, E.186
- Chain M: H.80
- Ligands: 3TR.49
5 PLIP interactions:3 interactions with chain D, 1 interactions with chain M, 1 Ligand-Water interactions- Metal complexes: D:H.53, D:H.182, D:E.186, M:H.80, H2O.35
MN.16: 8 residues within 4Å:- Chain D: F.110, R.174
- Chain H: F.110, R.174
- Chain L: F.110, R.174
- Ligands: MN.32, MN.48
No protein-ligand interaction detected (PLIP)MN.18: 5 residues within 4Å:- Chain E: H.79, E.83, H.158
- Chain V: H.183
- Ligands: 3TR.17
5 PLIP interactions:1 interactions with chain V, 3 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: V:H.183, E:H.79, E:E.83, E:H.158, H2O.12
MN.19: 5 residues within 4Å:- Chain E: H.53, H.182, E.186
- Chain U: H.80
- Ligands: 3TR.81
5 PLIP interactions:3 interactions with chain E, 1 interactions with chain U, 1 Ligand-Water interactions- Metal complexes: E:H.53, E:H.182, E:E.186, U:H.80, H2O.57
MN.20: 8 residues within 4Å:- Chain B: F.110, R.174
- Chain E: F.110, R.174
- Chain K: F.110, R.174
- Ligands: MN.8, MN.44
No protein-ligand interaction detected (PLIP)MN.22: 5 residues within 4Å:- Chain F: H.79, E.83, H.158
- Chain U: H.183
- Ligands: 3TR.21
5 PLIP interactions:3 interactions with chain F, 1 interactions with chain U, 1 Ligand-Water interactions- Metal complexes: F:H.79, F:E.83, F:H.158, U:H.183, H2O.15
MN.23: 5 residues within 4Å:- Chain F: H.53, H.182, E.186
- Chain V: H.80
- Ligands: 3TR.85
5 PLIP interactions:3 interactions with chain F, 1 interactions with chain V, 1 Ligand-Water interactions- Metal complexes: F:H.53, F:H.182, F:E.186, V:H.80, H2O.60
MN.24: 8 residues within 4Å:- Chain C: F.110, R.174
- Chain F: F.110, R.174
- Chain I: F.110, R.174
- Ligands: MN.12, MN.36
No protein-ligand interaction detected (PLIP)MN.26: 5 residues within 4Å:- Chain G: H.79, E.83, H.158
- Chain W: H.183
- Ligands: 3TR.25
5 PLIP interactions:3 interactions with chain G, 1 interactions with chain W, 1 Ligand-Water interactions- Metal complexes: G:H.79, G:E.83, G:H.158, W:H.183, H2O.18
MN.27: 5 residues within 4Å:- Chain G: H.53, H.182, E.186
- Chain X: H.80
- Ligands: 3TR.93
5 PLIP interactions:3 interactions with chain G, 1 interactions with chain X, 1 Ligand-Water interactions- Metal complexes: G:H.53, G:H.182, G:E.186, X:H.80, H2O.65
MN.28: 8 residues within 4Å:- Chain A: F.110, R.174
- Chain G: F.110, R.174
- Chain J: F.110, R.174
- Ligands: MN.4, MN.40
No protein-ligand interaction detected (PLIP)MN.30: 5 residues within 4Å:- Chain H: H.79, E.83, H.158
- Chain X: H.183
- Ligands: 3TR.29
5 PLIP interactions:3 interactions with chain H, 1 interactions with chain X, 1 Ligand-Water interactions- Metal complexes: H:H.79, H:E.83, H:H.158, X:H.183, H2O.21
MN.31: 5 residues within 4Å:- Chain H: H.53, H.182, E.186
- Chain W: H.80
- Ligands: 3TR.89
5 PLIP interactions:1 interactions with chain W, 3 interactions with chain H, 1 Ligand-Water interactions- Metal complexes: W:H.80, H:H.53, H:H.182, H:E.186, H2O.62
MN.32: 8 residues within 4Å:- Chain D: F.110, R.174
- Chain H: F.110, R.174
- Chain L: F.110, R.174
- Ligands: MN.16, MN.48
No protein-ligand interaction detected (PLIP)MN.34: 5 residues within 4Å:- Chain I: H.79, E.83, H.158
- Chain Q: H.183
- Ligands: 3TR.33
5 PLIP interactions:3 interactions with chain I, 1 interactions with chain Q, 1 Ligand-Water interactions- Metal complexes: I:H.79, I:E.83, I:H.158, Q:H.183, H2O.23
MN.35: 5 residues within 4Å:- Chain I: H.53, H.182, E.186
- Chain R: H.80
- Ligands: 3TR.69
5 PLIP interactions:1 interactions with chain R, 3 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: R:H.80, I:H.53, I:H.182, I:E.186, H2O.49
MN.36: 8 residues within 4Å:- Chain C: F.110, R.174
- Chain F: F.110, R.174
- Chain I: F.110, R.174
- Ligands: MN.12, MN.24
No protein-ligand interaction detected (PLIP)MN.38: 5 residues within 4Å:- Chain J: H.79, E.83, H.158
- Chain R: H.183
- Ligands: 3TR.37
5 PLIP interactions:3 interactions with chain J, 1 interactions with chain R, 1 Ligand-Water interactions- Metal complexes: J:H.79, J:E.83, J:H.158, R:H.183, H2O.26
MN.39: 5 residues within 4Å:- Chain J: H.53, H.182, E.186
- Chain Q: H.80
- Ligands: 3TR.65
5 PLIP interactions:3 interactions with chain J, 1 interactions with chain Q, 1 Ligand-Water interactions- Metal complexes: J:H.53, J:H.182, J:E.186, Q:H.80, H2O.46
MN.40: 8 residues within 4Å:- Chain A: F.110, R.174
- Chain G: F.110, R.174
- Chain J: F.110, R.174
- Ligands: MN.4, MN.28
No protein-ligand interaction detected (PLIP)MN.42: 5 residues within 4Å:- Chain K: H.79, E.83, H.158
- Chain T: H.183
- Ligands: 3TR.41
5 PLIP interactions:3 interactions with chain K, 1 interactions with chain T, 1 Ligand-Water interactions- Metal complexes: K:H.79, K:E.83, K:H.158, T:H.183, H2O.29
MN.43: 5 residues within 4Å:- Chain K: H.53, H.182, E.186
- Chain S: H.80
- Ligands: 3TR.73
5 PLIP interactions:1 interactions with chain S, 3 interactions with chain K, 1 Ligand-Water interactions- Metal complexes: S:H.80, K:H.53, K:H.182, K:E.186, H2O.52
MN.44: 8 residues within 4Å:- Chain B: F.110, R.174
- Chain E: F.110, R.174
- Chain K: F.110, R.174
- Ligands: MN.8, MN.20
No protein-ligand interaction detected (PLIP)MN.46: 5 residues within 4Å:- Chain L: H.79, E.83, H.158
- Chain S: H.183
- Ligands: 3TR.45
5 PLIP interactions:1 interactions with chain S, 3 interactions with chain L, 1 Ligand-Water interactions- Metal complexes: S:H.183, L:H.79, L:E.83, L:H.158, H2O.31
MN.47: 5 residues within 4Å:- Chain L: H.53, H.182, E.186
- Chain T: H.80
- Ligands: 3TR.77
5 PLIP interactions:1 interactions with chain T, 3 interactions with chain L, 1 Ligand-Water interactions- Metal complexes: T:H.80, L:H.53, L:H.182, L:E.186, H2O.54
MN.48: 8 residues within 4Å:- Chain D: F.110, R.174
- Chain H: F.110, R.174
- Chain L: F.110, R.174
- Ligands: MN.16, MN.32
No protein-ligand interaction detected (PLIP)MN.50: 5 residues within 4Å:- Chain D: H.183
- Chain M: H.79, E.83, H.158
- Ligands: 3TR.49
5 PLIP interactions:3 interactions with chain M, 1 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: M:H.79, M:E.83, M:H.158, D:H.183, H2O.34
MN.51: 5 residues within 4Å:- Chain C: H.80
- Chain M: H.53, H.182, E.186
- Ligands: 3TR.9
5 PLIP interactions:3 interactions with chain M, 1 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: M:H.53, M:H.182, M:E.186, C:H.80, H2O.8
MN.52: 8 residues within 4Å:- Chain M: F.110, R.174
- Chain S: F.110, R.174
- Chain V: F.110, R.174
- Ligands: MN.76, MN.88
No protein-ligand interaction detected (PLIP)MN.54: 5 residues within 4Å:- Chain C: H.183
- Chain N: H.79, E.83, H.158
- Ligands: 3TR.53
5 PLIP interactions:3 interactions with chain N, 1 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: N:H.79, N:E.83, N:H.158, C:H.183, H2O.37
MN.55: 5 residues within 4Å:- Chain D: H.80
- Chain N: H.53, H.182, E.186
- Ligands: 3TR.13
5 PLIP interactions:3 interactions with chain N, 1 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: N:H.53, N:H.182, N:E.186, D:H.80, H2O.11
MN.56: 8 residues within 4Å:- Chain N: F.110, R.174
- Chain Q: F.110, R.174
- Chain W: F.110, R.174
- Ligands: MN.68, MN.92
No protein-ligand interaction detected (PLIP)MN.58: 5 residues within 4Å:- Chain A: H.183
- Chain O: H.79, E.83, H.158
- Ligands: 3TR.57
5 PLIP interactions:3 interactions with chain O, 1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: O:H.79, O:E.83, O:H.158, A:H.183, H2O.40
MN.59: 5 residues within 4Å:- Chain B: H.80
- Chain O: H.53, H.182, E.186
- Ligands: 3TR.5
5 PLIP interactions:3 interactions with chain O, 1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: O:H.53, O:H.182, O:E.186, B:H.80, H2O.5
MN.60: 8 residues within 4Å:- Chain O: F.110, R.174
- Chain R: F.110, R.174
- Chain U: F.110, R.174
- Ligands: MN.72, MN.84
No protein-ligand interaction detected (PLIP)MN.62: 5 residues within 4Å:- Chain B: H.183
- Chain P: H.79, E.83, H.158
- Ligands: 3TR.61
5 PLIP interactions:1 interactions with chain B, 3 interactions with chain P, 1 Ligand-Water interactions- Metal complexes: B:H.183, P:H.79, P:E.83, P:H.158, H2O.42
MN.63: 5 residues within 4Å:- Chain A: H.80
- Chain P: H.53, H.182, E.186
- Ligands: 3TR.1
5 PLIP interactions:3 interactions with chain P, 1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: P:H.53, P:H.182, P:E.186, A:H.80, H2O.2
MN.64: 8 residues within 4Å:- Chain P: F.110, R.174
- Chain T: F.110, R.174
- Chain X: F.110, R.174
- Ligands: MN.80, MN.96
No protein-ligand interaction detected (PLIP)MN.66: 5 residues within 4Å:- Chain J: H.183
- Chain Q: H.79, E.83, H.158
- Ligands: 3TR.65
5 PLIP interactions:1 interactions with chain J, 3 interactions with chain Q, 1 Ligand-Water interactions- Metal complexes: J:H.183, Q:H.79, Q:E.83, Q:H.158, H2O.45
MN.67: 5 residues within 4Å:- Chain I: H.80
- Chain Q: H.53, H.182, E.186
- Ligands: 3TR.33
5 PLIP interactions:3 interactions with chain Q, 1 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: Q:H.53, Q:H.182, Q:E.186, I:H.80, H2O.24
MN.68: 8 residues within 4Å:- Chain N: F.110, R.174
- Chain Q: F.110, R.174
- Chain W: F.110, R.174
- Ligands: MN.56, MN.92
No protein-ligand interaction detected (PLIP)MN.70: 5 residues within 4Å:- Chain I: H.183
- Chain R: H.79, E.83, H.158
- Ligands: 3TR.69
5 PLIP interactions:1 interactions with chain I, 3 interactions with chain R, 1 Ligand-Water interactions- Metal complexes: I:H.183, R:H.79, R:E.83, R:H.158, H2O.48
MN.71: 5 residues within 4Å:- Chain J: H.80
- Chain R: H.53, H.182, E.186
- Ligands: 3TR.37
5 PLIP interactions:3 interactions with chain R, 1 interactions with chain J, 1 Ligand-Water interactions- Metal complexes: R:H.53, R:H.182, R:E.186, J:H.80, H2O.27
MN.72: 8 residues within 4Å:- Chain O: F.110, R.174
- Chain R: F.110, R.174
- Chain U: F.110, R.174
- Ligands: MN.60, MN.84
No protein-ligand interaction detected (PLIP)MN.74: 5 residues within 4Å:- Chain K: H.183
- Chain S: H.79, E.83, H.158
- Ligands: 3TR.73
5 PLIP interactions:3 interactions with chain S, 1 interactions with chain K, 1 Ligand-Water interactions- Metal complexes: S:H.79, S:E.83, S:H.158, K:H.183, H2O.51
MN.75: 5 residues within 4Å:- Chain L: H.80
- Chain S: H.53, H.182, E.186
- Ligands: 3TR.45
5 PLIP interactions:3 interactions with chain S, 1 interactions with chain L, 1 Ligand-Water interactions- Metal complexes: S:H.53, S:H.182, S:E.186, L:H.80, H2O.32
MN.76: 8 residues within 4Å:- Chain M: F.110, R.174
- Chain S: F.110, R.174
- Chain V: F.110, R.174
- Ligands: MN.52, MN.88
No protein-ligand interaction detected (PLIP)MN.78: 5 residues within 4Å:- Chain L: H.183
- Chain T: H.79, E.83, H.158
- Ligands: 3TR.77
5 PLIP interactions:1 interactions with chain L, 3 interactions with chain T, 1 Ligand-Water interactions- Metal complexes: L:H.183, T:H.79, T:E.83, T:H.158, H2O.53
MN.79: 5 residues within 4Å:- Chain K: H.80
- Chain T: H.53, H.182, E.186
- Ligands: 3TR.41
5 PLIP interactions:3 interactions with chain T, 1 interactions with chain K, 1 Ligand-Water interactions- Metal complexes: T:H.53, T:H.182, T:E.186, K:H.80, H2O.30
MN.80: 8 residues within 4Å:- Chain P: F.110, R.174
- Chain T: F.110, R.174
- Chain X: F.110, R.174
- Ligands: MN.64, MN.96
No protein-ligand interaction detected (PLIP)MN.82: 5 residues within 4Å:- Chain E: H.183
- Chain U: H.79, E.83, H.158
- Ligands: 3TR.81
5 PLIP interactions:3 interactions with chain U, 1 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: U:H.79, U:E.83, U:H.158, E:H.183, H2O.56
MN.83: 5 residues within 4Å:- Chain F: H.80
- Chain U: H.53, H.182, E.186
- Ligands: 3TR.21
5 PLIP interactions:1 interactions with chain F, 3 interactions with chain U, 1 Ligand-Water interactions- Metal complexes: F:H.80, U:H.53, U:H.182, U:E.186, H2O.16
MN.84: 8 residues within 4Å:- Chain O: F.110, R.174
- Chain R: F.110, R.174
- Chain U: F.110, R.174
- Ligands: MN.60, MN.72
No protein-ligand interaction detected (PLIP)MN.86: 5 residues within 4Å:- Chain F: H.183
- Chain V: H.79, E.83, H.158
- Ligands: 3TR.85
5 PLIP interactions:1 interactions with chain F, 3 interactions with chain V, 1 Ligand-Water interactions- Metal complexes: F:H.183, V:H.79, V:E.83, V:H.158, H2O.59
MN.87: 5 residues within 4Å:- Chain E: H.80
- Chain V: H.53, H.182, E.186
- Ligands: 3TR.17
5 PLIP interactions:3 interactions with chain V, 1 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: V:H.53, V:H.182, V:E.186, E:H.80, H2O.13
MN.88: 8 residues within 4Å:- Chain M: F.110, R.174
- Chain S: F.110, R.174
- Chain V: F.110, R.174
- Ligands: MN.52, MN.76
No protein-ligand interaction detected (PLIP)MN.90: 5 residues within 4Å:- Chain H: H.183
- Chain W: H.79, E.83, H.158
- Ligands: 3TR.89
5 PLIP interactions:1 interactions with chain H, 3 interactions with chain W, 1 Ligand-Water interactions- Metal complexes: H:H.183, W:H.79, W:E.83, W:H.158, H2O.62
MN.91: 5 residues within 4Å:- Chain G: H.80
- Chain W: H.53, H.182, E.186
- Ligands: 3TR.25
5 PLIP interactions:1 interactions with chain G, 3 interactions with chain W, 1 Ligand-Water interactions- Metal complexes: G:H.80, W:H.53, W:H.182, W:E.186, H2O.19
MN.92: 8 residues within 4Å:- Chain N: F.110, R.174
- Chain Q: F.110, R.174
- Chain W: F.110, R.174
- Ligands: MN.56, MN.68
No protein-ligand interaction detected (PLIP)MN.94: 5 residues within 4Å:- Chain G: H.183
- Chain X: H.79, E.83, H.158
- Ligands: 3TR.93
5 PLIP interactions:3 interactions with chain X, 1 interactions with chain G, 1 Ligand-Water interactions- Metal complexes: X:H.79, X:E.83, X:H.158, G:H.183, H2O.64
MN.95: 5 residues within 4Å:- Chain H: H.80
- Chain X: H.53, H.182, E.186
- Ligands: 3TR.29
5 PLIP interactions:1 interactions with chain H, 3 interactions with chain X, 1 Ligand-Water interactions- Metal complexes: H:H.80, X:H.53, X:H.182, X:E.186, H2O.22
MN.96: 8 residues within 4Å:- Chain P: F.110, R.174
- Chain T: F.110, R.174
- Chain X: F.110, R.174
- Ligands: MN.64, MN.80
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ahangar, M.S. et al., Crystal structures of the native, substrate- bound and inhibited forms of Mycobacterium tuberculosis imidazole glycerol phosphate dehydratase. Acta Crystallogr.,Sect.D (2013)
- Release Date
- 2013-08-28
- Peptides
- Imidazoleglycerol-phosphate dehydratase: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-24-mer
- Ligands
- 24 x 3TR: 3-AMINO-1,2,4-TRIAZOLE(Non-covalent)
- 72 x MN: MANGANESE (II) ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ahangar, M.S. et al., Crystal structures of the native, substrate- bound and inhibited forms of Mycobacterium tuberculosis imidazole glycerol phosphate dehydratase. Acta Crystallogr.,Sect.D (2013)
- Release Date
- 2013-08-28
- Peptides
- Imidazoleglycerol-phosphate dehydratase: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A