SMTL ID : 4mib.1 (1 other biounit)

Hepatitis C Virus polymerase NS5B genotype 1b (BK) in complex with Compound 48 (N-({(3S)-1-[6-tert-butyl-5-methoxy-8-(2-oxo-1,2-dihydropyridin-3-yl)quinolin-3-yl]pyrrolidin-3-yl}methyl)methanesulfonamide)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 10 residues within 4Å: Chain A: R.200, L.204, L.314, V.321, I.363, S.365, S.368, N.369, V.370, L.384 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.200

1 x 28M: N-({(3S)-1-[6-tert-butyl-5-methoxy-8-(2-oxo-1,2-dihydropyridin-3-yl)quinolin-3-yl]pyrrolidin-3-yl}methyl)methanesulfonamide(Non-covalent)

28M.2: 18 residues within 4Å: Chain A: F.193, R.200, S.288, N.291, N.316, G.317, D.318, C.366, S.368, L.384, G.410, N.411, M.414, Y.415, Q.446, I.447, Y.448, S.556 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.193, A:M.414, A:Y.415, A:Y.415 Hydrogen bonds: A:N.291, A:D.318, A:Q.446, A:Q.446, A:Y.448, A:S.556 pi-Stacking: A:Y.448, A:Y.448

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Talamas, F.X. et al., Discovery of N-[4-[6-tert-butyl-5-methoxy-8-(6-methoxy-2-oxo-1H-pyridin-3-yl)-3-quinolyl]phenyl]methanesulfonamide (RG7109), a potent inhibitor of the hepatitis C virus NS5B polymerase. J.Med.Chem. (2014)

Release Date

2014-05-07

Peptides

RNA-DIRECTED RNA POLYMERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-DIRECTED RNA POLYMERASE

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