SMTL ID : 4mk8.1 (1 other biounit)

Hepatitis C Virus polymerase NS5B genotype 1b (BK) in complex with inhibitor 4 (N-(4-{2-[3-tert-butyl-2-methoxy-5-(2-oxo-1,2-dihydropyridin-3-yl)phenyl]ethyl}phenyl)methanesulfonamide)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 10 residues within 4Å: Chain A: R.200, L.204, V.321, I.363, S.365, S.368, N.369, V.370, L.384 Ligands: 28Q.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.200

1 x 28Q: N-(4-{2-[3-TERT-BUTYL-2-METHOXY-5-(2-OXO-1,2-DIHYDROPYRIDIN-3-YL)PHENYL]ETHYL}PHENYL)METHANESULFONAMIDE(Non-covalent)

28Q.2: 19 residues within 4Å: Chain A: F.193, R.200, S.288, N.291, N.316, G.317, D.318, D.319, S.368, L.384, G.410, N.411, M.414, Y.415, Q.446, I.447, Y.448, S.556 Ligands: DMS.1 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:D.319, A:L.384, A:M.414, A:Y.415, A:Y.415, A:Y.448 Hydrogen bonds: A:N.291, A:D.318, A:D.318, A:Y.448 Water bridges: A:R.200, A:G.449, A:G.449, A:S.556 pi-Stacking: A:F.193, A:Y.448

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schoenfeld, R.C. et al., Discovery of a Novel Series of Potent Non-Nucleoside Inhibitors of Hepatitis C Virus NS5B. J.Med.Chem. (2013)

Release Date

2013-10-09

Peptides

RNA-DIRECTED RNA POLYMERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-DIRECTED RNA POLYMERASE

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