SMTL ID : 4mk7.1 (1 other biounit)

Hepatitis C Virus polymerase NS5B genotype 1b (BK) in complex with inhibitor 2 (3-(3-tert-butyl-4-methoxyphenyl)pyridin-2(1H)-one)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.220, T.221, D.318 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.221, H2O.2

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 9 residues within 4Å: Chain A: R.200, L.204, I.363, S.365, S.368, N.369, V.370, L.384 Ligands: 28O.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.200

1 x 28O: 3-(3-tert-butyl-4-methoxyphenyl)pyridin-2(1H)-one(Non-covalent)

28O.3: 12 residues within 4Å: Chain A: F.193, R.200, N.316, C.366, G.410, N.411, M.414, Y.415, Q.446, I.447, Y.448 Ligands: DMS.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:M.414, A:Y.415, A:Y.448 Hydrogen bonds: A:Q.446, A:Y.448 Water bridges: A:R.200, A:G.449

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schoenfeld, R.C. et al., Discovery of a Novel Series of Potent Non-Nucleoside Inhibitors of Hepatitis C Virus NS5B. J.Med.Chem. (2013)

Release Date

2013-10-09

Peptides

RNA-DIRECTED RNA POLYMERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-DIRECTED RNA POLYMERASE

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