SMTL ID : 4my1.1 (1 other biounit)

Crystal Structure of the Inosine 5'-monophosphate Dehydrogenase, with a Internal Deletion of CBS Domain from Bacillus anthracis str. Ames complexed with P68

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-tetramer

Ligands

4 x IMP: INOSINIC ACID(Non-covalent)

IMP.1: 21 residues within 4Å: Chain A: A.73, M.75, G.202, S.203, I.204, C.205, T.207, D.238, G.239, G.240, M.259, L.260, G.261, S.262, Y.285, G.287, M.288, G.289, E.313, G.314 Ligands: P68.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.177, A:S.203, A:D.238, A:G.240, A:G.261, A:S.262, A:Y.285, A:M.288, A:G.289, A:E.313 IMP.3: 22 residues within 4Å: Chain B: A.73, M.75, G.202, S.203, I.204, C.205, T.207, D.238, G.239, G.240, M.259, L.260, G.261, S.262, Y.285, G.287, M.288, G.289, S.290, E.313, G.314 Ligands: P68.4 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:N.177, B:S.203, B:D.238, B:G.240, B:G.261, B:S.262, B:Y.285, B:M.288, B:G.289, B:S.290, B:E.313 IMP.5: 24 residues within 4Å: Chain C: A.73, M.75, N.177, K.196, G.202, S.203, I.204, C.205, T.207, D.238, G.239, G.240, M.259, L.260, G.261, S.262, Y.285, G.287, M.288, G.289, S.290, E.313, G.314 Ligands: P68.6 12 PLIP interactions: 1 interactions with chain D, 11 interactions with chain C Water bridges: D:H.371, C:S.262 Hydrogen bonds: C:N.177, C:K.196, C:S.203, C:G.240, C:G.261, C:S.262, C:M.288, C:G.289, C:S.290, C:E.313 IMP.7: 23 residues within 4Å: Chain D: A.73, M.75, N.177, G.202, S.203, I.204, C.205, T.207, D.238, G.239, G.240, M.259, L.260, G.261, S.262, Y.285, G.287, M.288, G.289, S.290, E.313, G.314 Ligands: P68.8 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:N.177, D:S.203, D:D.238, D:G.240, D:I.241, D:G.261, D:S.262, D:M.288, D:G.289, D:S.290, D:E.313

4 x P68: 1-(4-bromophenyl)-3-(2-{3-[(1E)-N-hydroxyethanimidoyl]phenyl}propan-2-yl)urea(Non-covalent)

P68.2: 14 residues within 4Å: Chain A: A.150, T.207, M.288, G.289, M.294, L.310, V.311, E.313 Chain C: V.49, P.51, A.338, G.341, Y.342 Ligands: IMP.1 8 PLIP interactions: 4 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: C:P.51, C:Y.342, A:A.150, A:L.310 Hydrogen bonds: C:Y.342, A:E.313, A:E.313 Halogen bonds: C:V.49 P68.4: 13 residues within 4Å: Chain A: V.49, P.51, G.341, Y.342 Chain B: A.150, H.151, T.207, M.288, G.289, M.294, V.311, E.313 Ligands: IMP.3 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:E.313, B:E.313 Hydrophobic interactions: A:P.51 pi-Stacking: A:Y.342 Halogen bonds: A:V.49 P68.6: 14 residues within 4Å: Chain C: A.150, H.151, T.207, M.288, G.289, M.294, V.311, E.313 Chain D: V.49, P.51, A.338, G.341, Y.342 Ligands: IMP.5 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain D Hydrophobic interactions: C:A.150, D:P.51, D:Y.342, D:Y.342 Hydrogen bonds: C:E.313, C:E.313 P68.8: 14 residues within 4Å: Chain B: V.49, P.51, A.338, G.341, Y.342 Chain D: A.150, H.151, M.288, G.289, M.294, V.311, P.312, E.313 Ligands: IMP.7 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain B Hydrophobic interactions: D:E.313, B:Y.342 Hydrogen bonds: D:T.207, D:E.313, D:E.313

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of the Inosine 5'-monophosphate Dehydrogenase, with a Internal Deletion of CBS Domain from Bacillus anthracis str. Ames complexed with P68. To be Published

Release Date

2014-01-01

Peptides

Inosine-5'-monophosphate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Inosine-5'-monophosphate dehydrogenase

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