- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x IMP: INOSINIC ACID(Non-covalent)
- 4 x 2F0: 2-chloro-5-{[(2-{3-[(1E)-N-hydroxyethanimidoyl]phenyl}propan-2-yl)carbamoyl]amino}benzamide(Non-covalent)
2F0.2: 13 residues within 4Å:- Chain A: A.150, H.151, T.207, M.288, G.289, M.294, V.311, E.313
- Chain B: P.51, A.338, G.341, Y.342
- Ligands: IMP.1
10 PLIP interactions:7 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:A.150, B:P.51, B:A.338, B:Y.342
- Hydrogen bonds: A:T.207, A:E.313, A:E.313, A:E.313
- Water bridges: A:S.154, A:S.154
2F0.9: 15 residues within 4Å:- Chain A: V.49, L.50, P.51, A.338, G.341, Y.342
- Chain C: T.149, A.150, H.151, T.207, M.288, G.289, V.311, E.313
- Ligands: IMP.17
11 PLIP interactions:8 interactions with chain C, 3 interactions with chain A- Hydrophobic interactions: C:A.150, C:E.313, A:P.51, A:A.338, A:Y.342
- Hydrogen bonds: C:T.207, C:E.313, C:E.313
- Water bridges: C:A.150, C:E.313, C:E.313
2F0.11: 13 residues within 4Å:- Chain B: A.150, T.207, M.288, G.289, M.294, V.311, E.313
- Chain D: L.50, P.51, A.338, G.341, Y.342
- Ligands: IMP.10
8 PLIP interactions:2 interactions with chain D, 6 interactions with chain B- Hydrophobic interactions: D:P.51, D:Y.342, B:A.150, B:E.313, B:E.313
- Hydrogen bonds: B:H.151, B:E.313, B:E.313
2F0.24: 13 residues within 4Å:- Chain C: P.51, A.338, G.341, Y.342
- Chain D: A.150, H.151, T.207, M.288, G.289, M.294, V.311, E.313
- Ligands: IMP.23
8 PLIP interactions:5 interactions with chain D, 3 interactions with chain C- Hydrophobic interactions: D:A.150, D:E.313, C:P.51, C:Y.342, C:Y.342
- Hydrogen bonds: D:T.207, D:E.313, D:E.313
- 9 x FMT: FORMIC ACID(Non-functional Binders)
FMT.3: 3 residues within 4Å:- Chain A: E.27
- Chain B: Y.222, T.226
No protein-ligand interaction detected (PLIP)FMT.4: 0 residues within 4Å:- (No contacts)
1 PLIP interactions:1 interactions with chain A- Water bridges: A:S.28
FMT.7: 3 residues within 4Å:- Chain A: T.219, Y.222
- Chain C: F.30
No protein-ligand interaction detected (PLIP)FMT.12: 3 residues within 4Å:- Chain B: T.180, A.181, D.223
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:A.181
FMT.16: 1 residues within 4Å:- Chain B: R.229
No protein-ligand interaction detected (PLIP)FMT.20: 3 residues within 4Å:- Chain B: F.30, V.31
- Chain D: R.359
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:R.359
FMT.21: 7 residues within 4Å:- Chain B: R.208
- Chain D: D.38, L.41, K.249, L.365, S.368, H.369
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:K.249
FMT.22: 2 residues within 4Å:- Chain D: Y.222, D.223
2 PLIP interactions:2 interactions with chain D- Water bridges: D:D.223, D:D.223
FMT.25: 6 residues within 4Å:- Chain D: Q.65, L.66, N.67, A.88, G.91, G.92
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.67, D:N.67
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 2 residues within 4Å:- Chain A: V.59, H.256
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.256
EDO.13: 5 residues within 4Å:- Chain B: K.57, T.58, V.59, H.256, R.352
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:V.59, B:R.352
EDO.14: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)EDO.15: 7 residues within 4Å:- Chain A: R.208, V.209
- Chain B: D.38, L.41, K.249, L.365, H.369
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.249, B:K.249, B:H.369
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 1 x MLI: MALONATE ION(Non-functional Binders)
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.18: 4 residues within 4Å:- Chain C: V.43, P.44, A.45, Q.356
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:Q.356
SO4.19: 7 residues within 4Å:- Chain C: E.62, R.165, P.169, S.170, L.171, N.172, N.193
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:E.62, C:N.193
- Salt bridges: C:R.165
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, Y. et al., Crystal Structure of the Inosine 5'-monophosphate Dehydrogenase, with a Internal Deletion of CBS Domain from Bacillus anthracis str. Ame complexed with P32. To be Published
- Release Date
- 2014-07-23
- Peptides
- Inosine-5'-monophosphate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x IMP: INOSINIC ACID(Non-covalent)
- 4 x 2F0: 2-chloro-5-{[(2-{3-[(1E)-N-hydroxyethanimidoyl]phenyl}propan-2-yl)carbamoyl]amino}benzamide(Non-covalent)
- 9 x FMT: FORMIC ACID(Non-functional Binders)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 1 x MLI: MALONATE ION(Non-functional Binders)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, Y. et al., Crystal Structure of the Inosine 5'-monophosphate Dehydrogenase, with a Internal Deletion of CBS Domain from Bacillus anthracis str. Ame complexed with P32. To be Published
- Release Date
- 2014-07-23
- Peptides
- Inosine-5'-monophosphate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H