SMTL ID : 4mya.2 (1 other biounit)

Crystal Structure of the Inosine 5'-monophosphate Dehydrogenase with an Internal Deletion of the CBS Domain from Bacillus anthracis str. Ames complexed with inhibitor A110

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x IMP: INOSINIC ACID(Non-covalent)

IMP.1: 23 residues within 4Å: Chain A: A.73, M.75, N.177, G.202, S.203, I.204, C.205, T.207, D.238, G.239, G.240, M.259, L.260, G.261, S.262, Y.285, G.287, M.288, G.289, S.290, E.313, G.314 Ligands: 2EY.2 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:N.177, A:S.203, A:D.238, A:G.240, A:G.261, A:S.262, A:M.288, A:G.289, A:S.290, A:E.313 Water bridges: A:K.196, A:K.196, A:G.200, A:G.202, A:I.241, A:I.241, A:I.241, A:S.262, A:S.262, A:S.262 IMP.4: 23 residues within 4Å: Chain B: A.73, M.75, N.177, G.202, S.203, I.204, C.205, T.207, D.238, G.239, G.240, M.259, L.260, G.261, S.262, Y.285, G.287, M.288, G.289, S.290, E.313, G.314 Ligands: 2EY.5 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:N.177, B:S.203, B:D.238, B:G.240, B:G.261, B:S.262, B:M.288, B:G.289, B:S.290, B:E.313 Water bridges: B:K.196, B:K.196, B:G.200, B:G.202, B:I.241, B:I.241, B:I.241, B:S.262, B:S.262, B:S.262 IMP.7: 23 residues within 4Å: Chain C: A.73, M.75, N.177, G.202, S.203, I.204, C.205, T.207, D.238, G.239, G.240, M.259, L.260, G.261, S.262, Y.285, G.287, M.288, G.289, S.290, E.313, G.314 Ligands: 2EY.8 20 PLIP interactions: 19 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:N.177, C:S.203, C:D.238, C:G.240, C:G.261, C:S.262, C:M.288, C:G.289, C:S.290, C:E.313 Water bridges: C:K.196, C:K.196, C:G.200, C:G.202, C:I.241, C:I.241, C:I.241, C:S.262, C:S.262, A:H.371 IMP.10: 23 residues within 4Å: Chain D: A.73, M.75, N.177, G.202, S.203, I.204, C.205, T.207, D.238, G.239, G.240, M.259, L.260, G.261, S.262, Y.285, G.287, M.288, G.289, S.290, E.313, G.314 Ligands: 2EY.11 20 PLIP interactions: 1 interactions with chain B, 19 interactions with chain D Water bridges: B:H.371, D:K.196, D:K.196, D:G.200, D:G.202, D:I.241, D:I.241, D:I.241, D:S.262, D:S.262 Hydrogen bonds: D:N.177, D:S.203, D:D.238, D:G.240, D:G.261, D:S.262, D:M.288, D:G.289, D:S.290, D:E.313

4 x 2EY: 4-{(1R)-1-[1-(4-chlorophenyl)-1H-1,2,3-triazol-4-yl]ethoxy}quinolin-2(1H)-one(Non-covalent)

2EY.2: 13 residues within 4Å: Chain A: A.150, H.151, T.207, M.288, G.289, M.294, L.310, V.311, E.313 Chain D: P.51, G.341, Y.342 Ligands: IMP.1 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain D Hydrophobic interactions: A:A.150, A:E.313, D:P.51, D:Y.342 Water bridges: A:D.148 2EY.5: 13 residues within 4Å: Chain B: A.150, H.151, T.207, M.288, G.289, M.294, L.310, V.311, E.313 Chain C: P.51, G.341, Y.342 Ligands: IMP.4 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain B Hydrophobic interactions: C:P.51, C:Y.342, B:A.150, B:E.313 Water bridges: B:D.148 2EY.8: 13 residues within 4Å: Chain A: P.51, G.341, Y.342 Chain C: A.150, H.151, T.207, M.288, G.289, M.294, L.310, V.311, E.313 Ligands: IMP.7 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:A.150, C:E.313, A:P.51, A:Y.342 Water bridges: C:D.148 2EY.11: 13 residues within 4Å: Chain B: P.51, G.341, Y.342 Chain D: A.150, H.151, T.207, M.288, G.289, M.294, L.310, V.311, E.313 Ligands: IMP.10 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain D Hydrophobic interactions: B:P.51, B:Y.342, D:A.150, D:E.313 Water bridges: D:D.148

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: E.33, L.35, T.219 Chain C: F.30 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.33 GOL.6: 4 residues within 4Å: Chain B: E.33, L.35, T.219 Chain D: F.30 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.33 GOL.9: 4 residues within 4Å: Chain B: F.30 Chain C: E.33, L.35, T.219 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.33 GOL.12: 4 residues within 4Å: Chain A: F.30 Chain D: E.33, L.35, T.219 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of the Inosine 5'-monophosphate Dehydrogenase with an Internal Deletion of the CBS Domain from Bacillus anthracis str. Ames complexed with inhibitor A110. To be Published

Release Date

2014-01-01

Peptides

Inosine-5'-monophosphate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

D
B

Inosine-5'-monophosphate dehydrogenase

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