SMTL ID : 4nxu.5 (5 other biounits)

Crystal structure of the cytosolic domain of human MiD51

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 18 residues within 4Å: Chain A: Y.69, S.71, G.72, S.73, Q.79, H.85, Q.87, I.89, D.195, L.197, V.208, K.210, S.224, L.225, R.226, P.227, K.252, A.266 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:S.71, A:S.71, A:S.73, A:S.73, A:S.73, A:K.210, A:S.224 Water bridges: A:S.73, A:H.85, A:Q.87, A:Q.87, A:R.226, A:R.226, A:R.226, A:R.226, A:K.252, A:A.266, A:A.266 Salt bridges: A:H.85, A:R.226, A:K.252, A:K.252 ADP.3: 17 residues within 4Å: Chain B: S.71, G.72, S.73, Q.79, H.85, Q.87, I.89, D.195, L.197, V.208, K.210, S.224, L.225, R.226, P.227, K.252, A.266 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:S.71, B:S.71, B:S.73, B:S.73, B:S.73, B:S.224 Water bridges: B:R.226, B:R.226, B:K.256, B:K.256, B:A.266, B:A.266, B:A.266 Salt bridges: B:H.85, B:R.226, B:K.252, B:K.252

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.53, Y.69 Chain B: R.53, R.57 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Water bridges: A:L.70, B:S.54 Salt bridges: A:R.53, B:R.53, B:R.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Richter, V. et al., Structural and functional analysis of MiD51, a dynamin receptor required for mitochondrial fission. J.Cell Biol. (2014)

Release Date

2013-12-25

Peptides

Mitochondrial dynamic protein MID51: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Mitochondrial dynamic protein MID51

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