SMTL ID : 4nxv.5 (5 other biounits)

Crystal structure of the cytosolic domain of human MiD51

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 17 residues within 4Å: Chain A: S.71, G.72, S.73, Q.79, H.85, Q.87, I.89, L.197, V.208, K.210, R.222, S.224, L.225, R.226, P.227, K.252, A.266 27 PLIP interactions: 27 interactions with chain A Hydrogen bonds: A:S.71, A:S.71, A:S.73, A:S.73, A:S.73, A:Q.87, A:K.210, A:S.224, A:L.225, A:R.226 Water bridges: A:S.73, A:H.85, A:Q.87, A:Q.87, A:Q.87, A:R.226, A:R.226, A:R.226, A:R.226, A:K.252, A:A.266, A:A.266, A:A.266 Salt bridges: A:H.85, A:R.226, A:K.252, A:K.252 GDP.3: 17 residues within 4Å: Chain B: S.71, G.72, S.73, Q.79, H.85, Q.87, I.89, L.197, V.208, K.210, R.222, S.224, L.225, R.226, P.227, K.252, A.266 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:S.71, B:S.71, B:S.71, B:S.73, B:S.73, B:S.73, B:S.224, B:L.225 Water bridges: B:H.85, B:Q.87, B:R.226, B:K.252, B:A.266, B:A.266 Salt bridges: B:H.85, B:R.226, B:K.252, B:K.252

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.53, Y.69 Chain B: R.53, R.57 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Salt bridges: B:R.53, B:R.57 Water bridges: A:L.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Richter, V. et al., Structural and functional analysis of MiD51, a dynamin receptor required for mitochondrial fission. J.Cell Biol. (2014)

Release Date

2013-12-25

Peptides

Mitochondrial dynamic protein MID51: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Mitochondrial dynamic protein MID51

Related Entries With Identical Sequence