SMTL ID : 4nxu.6 (5 other biounits)

Crystal structure of the cytosolic domain of human MiD51

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 16 residues within 4Å: Chain A: S.71, G.72, S.73, Q.79, H.85, Q.87, I.89, L.197, V.208, K.210, S.224, L.225, R.226, P.227, K.252, A.266 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:S.71, A:S.71, A:S.73, A:S.73, A:S.73, A:S.224 Water bridges: A:H.85, A:Q.87, A:R.226, A:R.226, A:R.226, A:K.256, A:A.266, A:A.266, A:A.266, A:S.267 Salt bridges: A:H.85, A:R.226, A:K.252, A:K.252 ADP.6: 17 residues within 4Å: Chain B: Y.69, S.71, G.72, S.73, Q.79, H.85, Q.87, I.89, L.197, V.208, K.210, S.224, L.225, R.226, P.227, K.252, A.266 22 PLIP interactions: 22 interactions with chain B Hydrogen bonds: B:S.71, B:S.71, B:S.73, B:S.73, B:S.73, B:S.224 Water bridges: B:G.72, B:Q.87, B:Q.87, B:K.210, B:R.226, B:R.226, B:R.226, B:R.226, B:K.252, B:A.266, B:A.266, B:A.266 Salt bridges: B:H.85, B:R.226, B:K.252, B:K.252

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: P.103, E.105, G.113, F.115, L.223, N.313, K.315, V.316 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.113, A:N.313 GOL.7: 11 residues within 4Å: Chain B: P.103, G.104, E.105, P.112, G.113, F.114, F.115, L.223, N.313, K.315, V.316 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.104, B:E.105, B:G.113, B:F.114, B:F.114, B:N.313

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: A.50, R.53, S.54, R.57 Chain B: Y.69, Y.75 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Water bridges: A:R.53, A:R.53, B:L.70, B:L.70, B:L.70 Salt bridges: A:R.53, A:R.57 SO4.4: 3 residues within 4Å: Chain A: Y.131, R.134 Chain B: Q.96 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:R.134 Hydrogen bonds: B:Q.96 SO4.5: 3 residues within 4Å: Chain A: S.18, E.21, K.22 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.18, A:S.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Richter, V. et al., Structural and functional analysis of MiD51, a dynamin receptor required for mitochondrial fission. J.Cell Biol. (2014)

Release Date

2013-12-25

Peptides

Mitochondrial dynamic protein MID51: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
B

Mitochondrial dynamic protein MID51

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