SMTL ID : 4nxv.6 (5 other biounits)

Crystal structure of the cytosolic domain of human MiD51

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 16 residues within 4Å: Chain A: S.71, G.72, S.73, Q.79, H.85, Q.87, I.89, L.197, V.208, K.210, R.222, S.224, R.226, P.227, K.252, A.266 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:S.71, A:S.71, A:S.71, A:S.73, A:S.73, A:S.73, A:K.210, A:S.224 Water bridges: A:Q.87, A:Q.87, A:R.226, A:R.226, A:R.226, A:R.226, A:K.252, A:A.266, A:A.266, A:A.266 Salt bridges: A:H.85, A:R.226, A:K.252, A:K.252 GDP.5: 18 residues within 4Å: Chain B: S.71, G.72, S.73, Q.79, H.85, Q.87, I.89, D.195, L.197, V.208, K.210, R.222, S.224, L.225, R.226, P.227, K.252, A.266 24 PLIP interactions: 24 interactions with chain B Hydrogen bonds: B:S.71, B:S.71, B:S.73, B:S.73, B:S.73, B:Q.79, B:H.85, B:K.210, B:S.224 Water bridges: B:Q.87, B:R.226, B:R.226, B:R.226, B:R.226, B:R.226, B:K.252, B:K.252, B:A.266, B:A.266, B:A.266 Salt bridges: B:H.85, B:R.226, B:K.252, B:K.252

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: R.53, Y.69, Y.75 Chain B: A.50, R.53, R.57 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Salt bridges: B:R.53, B:R.57, A:R.53 SO4.3: 2 residues within 4Å: Chain B: Y.131, R.134 2 PLIP interactions: 2 interactions with chain B Water bridges: B:Y.131 Salt bridges: B:R.134 SO4.4: 4 residues within 4Å: Chain A: Y.131, R.134 Chain B: Q.96, N.97 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.134 Salt bridges: A:R.134

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 12 residues within 4Å: Chain B: P.143, K.144, A.147, V.208, A.209, K.210, P.211, H.212, D.218, L.220, W.221, R.222 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:V.208, B:R.222 Water bridges: B:H.212, B:L.220

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Richter, V. et al., Structural and functional analysis of MiD51, a dynamin receptor required for mitochondrial fission. J.Cell Biol. (2014)

Release Date

2013-12-25

Peptides

Mitochondrial dynamic protein MID51: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Mitochondrial dynamic protein MID51

Related Entries With Identical Sequence