SMTL ID : 4pqt.3 (2 other biounits)

Insights into the mechanism of deubiquitination by JAMM deubiquitinases from co-crystal structures of enzyme with substrate and product

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.118, C.159, H.166, H.168 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.118, A:C.159, A:H.166, A:H.168

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.3: 3 residues within 4Å: Chain A: Q.178, P.179, G.180 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.179, A:G.180 EDO.4: 6 residues within 4Å: Chain A: T.98 Chain B: T.12, L.13, L.74, V.75, L.76 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:T.98, B:L.13, B:L.76 Water bridges: A:Y.123, B:L.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shrestha, R.K. et al., Insights into the Mechanism of Deubiquitination by JAMM Deubiquitinases from Cocrystal Structures of the Enzyme with the Substrate and Product. Biochemistry (2014)

Release Date

2014-06-18

Peptides

AMSH-like protease sst2: A
Protein UBBP4: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

AMSH-like protease sst2

Protein UBBP4

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