- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ALX: 2-O-phosphono-alpha-D-glucopyranose(Non-covalent)
- 2 x BNX: 2-O-phosphono-beta-D-glucopyranose(Non-covalent)
BNX.2: 15 residues within 4Å:- Chain A: S.25, N.26, Y.117, W.150, N.256, Y.347, Y.348, W.390, S.391, N.392, G.393, T.402, E.406, E.482
- Ligands: ALX.1
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:N.26, A:N.26, A:Y.117, A:N.256, A:Y.347, A:Y.348, A:S.391, A:G.393
- Water bridges: A:W.395, A:E.406
BNX.9: 15 residues within 4Å:- Chain B: S.25, N.26, Y.117, W.150, N.256, Y.347, Y.348, W.390, S.391, N.392, G.393, T.402, E.406, E.482
- Ligands: ALX.8
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:N.26, B:N.26, B:Y.117, B:Y.117, B:N.256, B:S.391, B:G.393, B:E.406
- Water bridges: B:Y.348, B:W.395, B:E.406
- 4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.3: 1 residues within 4Å:- Chain A: F.442
No protein-ligand interaction detected (PLIP)PEG.4: 5 residues within 4Å:- Chain A: M.344, Y.374, F.379, R.416, W.417
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.416, A:R.416
- Water bridges: A:W.417
PEG.10: 1 residues within 4Å:- Chain B: F.442
No protein-ligand interaction detected (PLIP)PEG.11: 5 residues within 4Å:- Chain B: M.344, Y.374, F.379, R.416, W.417
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.416, B:R.416
- Water bridges: B:W.417
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 3 residues within 4Å:- Chain A: K.161, K.162, L.163
3 PLIP interactions:3 interactions with chain A- Water bridges: A:K.162, A:L.163, A:D.167
EDO.6: 5 residues within 4Å:- Chain A: D.91, A.94, Y.95, S.98, K.157
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:D.91, A:Y.95, A:S.98, A:S.98
- Water bridges: A:E.100, A:K.157
EDO.7: 4 residues within 4Å:- Chain A: V.288, A.296, S.297, I.298
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.296, A:I.298
EDO.12: 3 residues within 4Å:- Chain B: K.161, K.162, L.163
3 PLIP interactions:3 interactions with chain B- Water bridges: B:K.162, B:L.163, B:D.167
EDO.13: 5 residues within 4Å:- Chain B: D.91, A.94, Y.95, S.98, K.157
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:D.91, B:D.91, B:Y.95, B:S.98, B:S.98
- Water bridges: B:E.100, B:K.157
EDO.14: 4 residues within 4Å:- Chain B: V.288, A.296, S.297, I.298
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:A.296, B:I.298
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- El Sahili, A. et al., A Pyranose-2-Phosphate Motif Is Responsible for Both Antibiotic Import and Quorum-Sensing Regulation in Agrobacterium tumefaciens. Plos Pathog. (2015)
- Release Date
- 2015-08-19
- Peptides
- ABC transporter, substrate binding protein (Agrocinopines A and B): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ALX: 2-O-phosphono-alpha-D-glucopyranose(Non-covalent)
- 2 x BNX: 2-O-phosphono-beta-D-glucopyranose(Non-covalent)
- 4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- El Sahili, A. et al., A Pyranose-2-Phosphate Motif Is Responsible for Both Antibiotic Import and Quorum-Sensing Regulation in Agrobacterium tumefaciens. Plos Pathog. (2015)
- Release Date
- 2015-08-19
- Peptides
- ABC transporter, substrate binding protein (Agrocinopines A and B): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A