SMTL ID : 8cko.1

PBP AccA from A.tumefaciens C58 in complex with agrocinopine C-like

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

2 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 19 residues within 4Å: Chain A: P.15, N.16, S.17, N.22, A.23, I.24, S.25, V.27, M.344, Y.347, Y.348, Y.374, G.377, F.379, W.390 Ligands: GLC-FRU.2, GLC-FRU.2, BNX.3, ALX.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.16, A:Y.348, A:Y.348, A:Y.374, A:W.390 Water bridges: A:N.16, A:N.22 GLC-FRU.2: 19 residues within 4Å: Chain A: P.15, N.16, S.17, N.22, A.23, I.24, S.25, V.27, M.344, Y.347, Y.348, Y.374, G.377, F.379, W.390 Ligands: GLC-FRU.1, GLC-FRU.1, BNX.3, ALX.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.16, A:Y.348, A:Y.348, A:Y.374, A:W.390 Water bridges: A:N.16, A:N.22

1 x BNX: 2-O-phosphono-beta-D-glucopyranose(Non-covalent)

BNX.3: 20 residues within 4Å: Chain A: I.24, S.25, N.26, Y.117, W.150, N.256, Y.347, Y.348, W.390, S.391, N.392, G.393, W.395, T.402, E.406, Q.412, E.482 Ligands: GLC-FRU.1, GLC-FRU.2, ALX.4 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:N.26, A:N.26, A:N.26, A:N.256, A:Y.347, A:Y.348, A:W.390, A:S.391, A:S.391, A:G.393, A:E.406, A:E.406, A:E.406, A:E.482 Water bridges: A:W.395, A:Q.412, A:Q.412, A:Q.412

1 x ALX: 2-O-phosphono-alpha-D-glucopyranose(Non-covalent)

ALX.4: 20 residues within 4Å: Chain A: I.24, S.25, N.26, Y.117, W.150, N.256, Y.347, Y.348, W.390, S.391, N.392, G.393, W.395, T.402, E.406, Q.412, E.482 Ligands: GLC-FRU.1, GLC-FRU.2, BNX.3 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:N.26, A:N.26, A:N.26, A:Y.347, A:Y.348, A:W.390, A:S.391, A:S.391, A:G.393, A:E.406, A:E.406, A:E.406 Water bridges: A:W.395, A:Q.412, A:Q.412, A:Q.412

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Morera, S. et al., A highly conserved ligand-binding site for AccA transporters of antibiotic and quorum-sensing regulator in Agrobacterium leads to a different specificity. Biochem.J. (2024)

Release Date

2024-01-24

Peptides

ABC transporter substrate-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ABC transporter substrate-binding protein

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