SMTL ID : 4rjl.1

Gamma subunit of the translation initiation factor 2 from Sulfolobus solfataricus complexed with GDPCP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: T.23, T.46 Ligands: GCP.27 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.23, A:T.46, H2O.1, H2O.13 MG.2: 3 residues within 4Å: Chain A: V.151, V.154, S.155 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:V.151, A:V.154, H2O.13

23 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 4 residues within 4Å: Chain A: T.366, L.367, R.383, R.384 Ligand excluded by PLIP FMT.4: 5 residues within 4Å: Chain A: L.312, G.313, S.364, T.365 Ligands: 7PG.26 Ligand excluded by PLIP FMT.5: 2 residues within 4Å: Chain A: E.344, M.345 Ligand excluded by PLIP FMT.6: 5 residues within 4Å: Chain A: V.58, K.64, Y.68, L.86 Ligands: FMT.15 Ligand excluded by PLIP FMT.7: 2 residues within 4Å: Chain A: P.179, I.180 Ligand excluded by PLIP FMT.8: 4 residues within 4Å: Chain A: V.223, V.237, R.280, A.296 Ligand excluded by PLIP FMT.9: 2 residues within 4Å: Chain A: L.160, Y.163 Ligand excluded by PLIP FMT.10: 4 residues within 4Å: Chain A: R.130, V.134, F.169, V.340 Ligand excluded by PLIP FMT.11: 5 residues within 4Å: Chain A: D.152, V.153, L.186, H.187 Ligands: GCP.27 Ligand excluded by PLIP FMT.12: 6 residues within 4Å: Chain A: I.32, Y.51, A.52, E.53, G.282 Ligands: FMT.17 Ligand excluded by PLIP FMT.13: 3 residues within 4Å: Chain A: A.342, K.343, R.404 Ligand excluded by PLIP FMT.14: 5 residues within 4Å: Chain A: Y.206, R.207, D.208, Q.211, I.243 Ligand excluded by PLIP FMT.15: 4 residues within 4Å: Chain A: E.199, E.200, K.203 Ligands: FMT.6 Ligand excluded by PLIP FMT.16: 6 residues within 4Å: Chain A: W.3, N.55, T.70, E.71, P.72 Ligands: FMT.25 Ligand excluded by PLIP FMT.17: 3 residues within 4Å: Chain A: I.32, K.36 Ligands: FMT.12 Ligand excluded by PLIP FMT.18: 3 residues within 4Å: Chain A: K.332, W.410, L.412 Ligand excluded by PLIP FMT.19: 2 residues within 4Å: Chain A: K.254, P.271 Ligand excluded by PLIP FMT.20: 4 residues within 4Å: Chain A: K.212, Q.244, W.389, S.390 Ligand excluded by PLIP FMT.21: 2 residues within 4Å: Chain A: F.124, P.125 Ligand excluded by PLIP FMT.22: 5 residues within 4Å: Chain A: K.347, V.348, D.349, R.399, I.401 Ligand excluded by PLIP FMT.23: 2 residues within 4Å: Chain A: P.205, Y.206 Ligand excluded by PLIP FMT.24: 3 residues within 4Å: Chain A: F.286, K.287, E.288 Ligand excluded by PLIP FMT.25: 3 residues within 4Å: Chain A: N.55, R.88 Ligands: FMT.16 Ligand excluded by PLIP

1 x 7PG: 2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL(Non-covalent)

7PG.26: 12 residues within 4Å: Chain A: R.43, M.45, H.97, V.99, L.100, A.102, T.103, M.358, T.365, L.367, W.405 Ligands: FMT.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.43, A:R.43

1 x GCP: PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER(Non-covalent)

GCP.27: 19 residues within 4Å: Chain A: V.18, D.19, H.20, G.21, K.22, T.23, T.24, M.45, T.46, G.96, N.149, K.150, D.152, V.153, S.184, A.185, L.186 Ligands: MG.1, FMT.11 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:D.19, A:H.20, A:G.21, A:K.22, A:K.22, A:T.23, A:T.23, A:T.24, A:T.24, A:T.46, A:G.96, A:N.149, A:K.150, A:K.150, A:S.184, A:A.185, A:L.186 Water bridges: A:T.23, A:T.46, A:T.46, A:T.46, A:H.97 Salt bridges: A:D.152

2 x NA: SODIUM ION(Non-functional Binders)

NA.28: 2 residues within 4Å: Chain A: T.54, T.70 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.54, A:T.70, A:T.70 Water bridges: A:N.55 NA.29: 1 residues within 4Å: Chain A: M.111 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kravchenko, O.V. et al., Crystal structure of gamma subunit of the translation initiation factor 2 from Sulfolobus solfataricus in complex with GDPCP at 1.64A resolution. To be Published

Release Date

2015-11-11

Peptides

Translation initiation factor 2 subunit gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Translation initiation factor 2 subunit gamma

Related Entries With Identical Sequence