SMTL ID : 4rmh.1

Human Sirt2 in complex with SirReal2 and Ac-Lys-H3 peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

1 x ALY: Ac-Lys-H3 peptide(Non-covalent)

ALY.1: 7 residues within 4Å: Chain A: F.67, V.181, F.183, L.187, V.214, Q.215 Ligands: 3TE.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.67 Water bridges: A:Q.215

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.143, C.148, C.169, C.172 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.143, A:C.148, A:C.169, A:C.172

1 x 3TE: 2-[(4,6-dimethylpyrimidin-2-yl)sulfanyl]-N-[5-(naphthalen-1-ylmethyl)-1,3-thiazol-2-yl]acetamide(Non-covalent)

3TE.3: 19 residues within 4Å: Chain A: I.41, F.44, Y.52, I.66, F.67, F.79, A.83, L.86, Y.87, P.88, F.91, I.117, D.118, F.138, L.154, I.180, V.181, F.182 Ligands: ALY.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.44, A:F.44, A:F.67, A:F.79, A:Y.87, A:Y.87, A:F.91, A:I.117, A:F.138, A:F.138, A:L.154, A:I.180, A:I.180 pi-Stacking: A:F.138, A:F.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rumpf, T. et al., Selective Sirt2 inhibition by ligand-induced rearrangement of the active site. Nat Commun (2015)

Release Date

2015-02-25

Peptides

NAD-dependent protein deacetylase sirtuin-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD-dependent protein deacetylase sirtuin-2

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