SMTL ID : 4rmi.1

Human Sirt2 in complex with SirReal1 and Ac-Lys-OTC peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x GLU- ALY- ARG: Ac-Lys-OTC peptide(Non-covalent)

GLU-ALY-ARG.1: 14 residues within 4Å: Chain A: F.44, R.45, I.117, H.135, V.181, F.183, G.184, E.185, S.186, L.187, V.214, Q.215, P.216 Ligands: 3TK.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.117, A:H.135, A:V.181, A:L.187 Hydrogen bonds: A:R.45, A:R.45, A:H.135, A:V.181, A:E.185, A:E.185, A:Q.215, A:Q.215, A:Q.215

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.143, C.148, C.169, C.172 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.143, A:C.148, A:C.169, A:C.172

1 x 3TK: N-(5-benzyl-1,3-thiazol-2-yl)-2-[(4,6-dimethylpyrimidin-2-yl)sulfanyl]acetamide(Non-covalent)

3TK.3: 16 residues within 4Å: Chain A: F.44, F.67, F.79, L.82, A.83, L.86, Y.87, P.88, F.91, D.118, F.138, L.154, I.180, V.181, F.182 Ligands: GLU-ALY-ARG.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.44, A:F.67, A:F.79, A:L.82, A:Y.87, A:F.91, A:F.138, A:F.138, A:L.154, A:I.180 pi-Stacking: A:Y.87, A:F.138, A:F.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rumpf, T. et al., Selective Sirt2 inhibition by ligand-induced rearrangement of the active site. Nat Commun (2015)

Release Date

2015-02-25

Peptides

NAD-dependent protein deacetylase sirtuin-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD-dependent protein deacetylase sirtuin-2

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