- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.01 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x AR6: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE(Non-covalent)
AR6.2: 24 residues within 4Å:- Chain A: G.32, A.33, G.34, T.37, D.43, F.44, R.45, S.46, Y.52, Q.115, H.135, F.183, G.209, T.210, S.211, V.214, N.234, K.235, E.236, G.270, E.271, C.272
- Chain B: L.245
- Ligands: 4I5.3
20 PLIP interactions:20 interactions with chain A- Hydrogen bonds: A:A.33, A:T.37, A:T.37, A:F.44, A:R.45, A:R.45, A:Y.52, A:Q.115, A:Q.115, A:T.210, A:S.211, A:N.234, A:K.235, A:E.236, A:C.272
- Water bridges: A:S.38, A:Q.213, A:D.273
- Salt bridges: A:R.45, A:R.45
AR6.6: 23 residues within 4Å:- Chain B: G.32, A.33, G.34, T.37, D.43, F.44, R.45, S.46, Y.52, Q.115, H.135, F.183, G.209, T.210, S.211, V.214, N.234, K.235, E.236, G.270, E.271, C.272
- Ligands: 4I5.7
21 PLIP interactions:21 interactions with chain B- Hydrogen bonds: B:A.33, B:T.37, B:F.44, B:R.45, B:R.45, B:Y.52, B:Y.52, B:Q.115, B:H.135, B:S.211, B:N.234, B:K.235, B:E.236, B:E.236, B:E.271, B:E.271, B:C.272
- Water bridges: B:T.37, B:D.273
- Salt bridges: B:R.45, B:R.45
- 4 x 4I5: (6S)-2-chloro-5,6,7,8,9,10-hexahydrocyclohepta[b]indole-6-carboxamide(Non-covalent)
4I5.3: 15 residues within 4Å:- Chain A: A.33, I.41, P.42, F.44, F.67, Q.115, N.116, I.117, D.118, H.135, I.180, V.181, F.182
- Ligands: AR6.2, 4I5.4
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:A.33, A:I.41, A:F.44, A:I.117, A:I.117, A:H.135
- Hydrogen bonds: A:Q.115, A:I.117, A:D.118, A:D.118, A:D.118
- pi-Stacking: A:F.44
4I5.4: 11 residues within 4Å:- Chain A: I.41, F.67, F.79, A.83, L.86, Y.87, G.89, F.91, D.118, F.138
- Ligands: 4I5.3
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:I.41, A:I.41, A:A.83, A:F.91, A:D.118
- Hydrogen bonds: A:G.89
4I5.7: 14 residues within 4Å:- Chain B: I.41, P.42, F.44, F.67, Q.115, N.116, I.117, D.118, H.135, I.180, V.181, F.182
- Ligands: AR6.6, 4I5.8
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:I.41, B:F.44, B:I.117, B:I.117, B:H.135
- Hydrogen bonds: B:Q.115, B:I.117, B:D.118, B:D.118
- pi-Stacking: B:F.44
4I5.8: 11 residues within 4Å:- Chain B: I.41, F.67, F.79, A.83, L.86, Y.87, G.89, F.91, D.118, F.138
- Ligands: 4I5.7
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:I.41, B:I.41, B:A.83, B:L.86, B:D.118, B:F.138
- Hydrogen bonds: B:G.89, B:G.89
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rumpf, T. et al., Seeding for sirtuins: microseed matrix seeding to obtain crystals of human Sirt3 and Sirt2 suitable for soaking. Acta Crystallogr.,Sect.F (2015)
- Release Date
- 2015-12-02
- Peptides
- NAD-dependent protein deacetylase sirtuin-2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.01 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x AR6: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE(Non-covalent)
- 4 x 4I5: (6S)-2-chloro-5,6,7,8,9,10-hexahydrocyclohepta[b]indole-6-carboxamide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rumpf, T. et al., Seeding for sirtuins: microseed matrix seeding to obtain crystals of human Sirt3 and Sirt2 suitable for soaking. Acta Crystallogr.,Sect.F (2015)
- Release Date
- 2015-12-02
- Peptides
- NAD-dependent protein deacetylase sirtuin-2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B