SMTL ID : 8qt8.1

Crystal structure of human Sirt2 in complex with a TNFa-Myr analogue TNFn-34

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.143, C.148, C.169, C.172 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.143, A:C.148, A:C.169, A:C.172

1 x WWK: 3-dodecylsulfanylpropanoic acid(Non-covalent)

WWK.2: 12 residues within 4Å: Chain A: F.44, R.45, F.67, A.83, L.86, P.88, F.91, H.135, F.138, I.180, V.181 Chain B: K.6 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.44, A:F.44, A:A.83, A:L.86, A:F.91, A:H.135, A:F.138, A:F.138, A:F.138 Hydrogen bonds: A:R.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schutkowski, M. et al., New Super-Slow Substrates as novel Sirtuin-Inhibitors. To Be Published

Release Date

2024-10-23

Peptides

NAD-dependent protein deacetylase sirtuin-2: A
Peptide-based TNFa-Myr analogue TNFn-34: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NAD-dependent protein deacetylase sirtuin-2

Peptide-based TNFa-Myr analogue TNFn-34

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