SMTL ID : 4rrv.1

Crystal structure of PDK1 in complex with ATP and PIFtide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.41 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 18 residues within 4Å: Chain A: L.40, G.41, E.42, G.43, S.44, S.46, V.48, A.61, K.63, V.95, L.111, S.112, Y.113, A.114, E.118, L.164, T.174, D.175 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.43, A:S.44, A:S.44, A:S.46, A:S.112, A:A.114, A:E.118, A:E.118 Water bridges: A:D.175 Salt bridges: A:K.63

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: H.91, P.92, F.93, S.143, W.299, E.300, N.301, L.302, H.303 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.91, A:N.301, A:L.302, A:H.303 GOL.3: 3 residues within 4Å: Chain A: F.34, K.35, F.36 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.35, A:F.36 Water bridges: A:F.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rettenmaier, T.J. et al., A small-molecule mimic of a peptide docking motif inhibits the protein kinase PDK1. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-12-17

Peptides

3-phosphoinositide-dependent protein kinase 1: A
Serine/threonine-protein kinase N2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3-phosphoinositide-dependent protein kinase 1

Serine/threonine-protein kinase N2

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