SMTL ID : 8dqt.1

Human PDK1 kinase domain in complex with Valsartan

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.31 Å

Oligo State

monomer

Ligands

3 x U35: (2~{S})-3-methyl-2-[pentanoyl-[[4-[2-(2~{H}-1,2,3,4-tetrazol-5-yl)phenyl]phenyl]methyl]amino]butanoic acid(Non-covalent)

U35.1: 4 residues within 4Å: Chain A: V.76, T.80 Ligands: U35.2, U35.3 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.76 U35.2: 9 residues within 4Å: Chain A: K.28, V.79, R.83, T.100, F.101, Q.102, L.107, F.109 Ligands: U35.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.79, A:L.107, A:F.109, A:F.109 Hydrogen bonds: A:K.28, A:Q.102 Water bridges: A:Q.102, A:Q.102 Salt bridges: A:R.83 U35.3: 5 residues within 4Å: Chain A: I.71, V.76, P.77, T.80 Ligands: U35.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.76, A:V.76, A:P.77, A:P.77

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 9 residues within 4Å: Chain A: H.91, P.92, F.93, S.143, W.299, E.300, N.301, L.302, H.303 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.302, A:H.303, A:H.303

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sacerdoti, M. et al., Modulation of the substrate specificity of the kinase PDK1 by distinct conformations of the full-length protein. Sci.Signal. (2023)

Release Date

2023-06-21

Peptides

3-phosphoinositide-dependent protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3-phosphoinositide-dependent protein kinase 1

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