SMTL ID : 5lvn.1

Human PDK1 Kinase Domain in Complex with Adenosine Bound to the ATP-Binding Site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

monomer

Ligands

1 x DTD: DITHIANE DIOL(Non-covalent)

DTD.1: 8 residues within 4Å: Chain A: F.194, V.195, G.196, T.197, A.198, V.201, E.239, F.243 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.239

1 x ADN: ADENOSINE(Non-covalent)

ADN.2: 15 residues within 4Å: Chain A: L.40, G.41, E.42, G.43, V.48, A.61, V.95, L.111, S.112, Y.113, A.114, E.118, E.161, L.164, T.174 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.112, A:A.114, A:E.118 Water bridges: A:E.161

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: L.120, R.124 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schulze, J.O. et al., Bidirectional Allosteric Communication between the ATP-Binding Site and the Regulatory PIF Pocket in PDK1 Protein Kinase. Cell Chem Biol (2016)

Release Date

2016-10-19

Peptides

3-phosphoinositide-dependent protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3-phosphoinositide-dependent protein kinase 1

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