SMTL ID : 5lvp.3 (3 other biounits)

Human PDK1 Kinase Domain in Complex with an HM-Peptide Bound to the PIF-Pocket

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 15 residues within 4Å: Chain A: L.40, G.41, E.42, G.43, S.44, S.46, V.48, A.61, K.63, S.112, Y.113, A.114, E.118, E.161, L.164 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.44, A:S.44, A:S.46, A:S.112, A:A.114, A:E.118, A:E.118, A:E.161, A:D.175 Water bridges: A:G.117 Salt bridges: A:K.63

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: K.96, Y.98 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schulze, J.O. et al., Bidirectional Allosteric Communication between the ATP-Binding Site and the Regulatory PIF Pocket in PDK1 Protein Kinase. Cell Chem Biol (2016)

Release Date

2016-10-19

Peptides

3-phosphoinositide-dependent protein kinase 1: A
hydrophobic-motif peptide of PKB/Akt: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
E

3-phosphoinositide-dependent protein kinase 1

hydrophobic-motif peptide of PKB/Akt

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