SMTL ID : 4rsu.2 (2 other biounits)

Crystal structure of the light and hvem complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-3-3-mer

Ligands

7 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: R.153, D.154, G.155, T.156, R.157, S.158 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: R.97 Chain D: L.54, S.55 Ligand excluded by PLIP CL.3: 6 residues within 4Å: Chain B: R.153, D.154, G.155, T.156, R.157, S.158 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain B: G.44 Chain D: R.26, K.56, C.57 Ligand excluded by PLIP CL.6: 6 residues within 4Å: Chain C: R.153, D.154, G.155, T.156, R.157, S.158 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain C: R.97 Chain F: L.54, S.55 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain B: R.97 Chain E: L.54, S.55, K.56 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 7 residues within 4Å: Chain B: L.102, E.103 Chain C: L.45, D.154, T.156 Chain E: L.58, Q.59 4 PLIP interactions: 1 interactions with chain B, 2 interactions with chain C, 1 interactions with chain E Hydrogen bonds: B:E.103, C:D.154, E:Q.59 Water bridges: C:L.45 GOL.7: 9 residues within 4Å: Chain A: S.125, S.126, F.127 Chain B: S.125, S.126, F.127 Chain C: S.125, S.126, F.127 4 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: C:F.127, C:F.127, A:F.127, B:F.127 GOL.9: 7 residues within 4Å: Chain A: L.102, E.103 Chain B: L.45, D.154, T.156 Chain D: L.58, Q.59 5 PLIP interactions: 1 interactions with chain B, 3 interactions with chain D, 1 interactions with chain A Water bridges: B:D.154, D:Q.59 Hydrogen bonds: D:Q.59, D:Q.59, A:E.103 GOL.13: 7 residues within 4Å: Chain A: L.45, D.154, T.156 Chain C: L.102, E.103 Chain F: L.58, Q.59 4 PLIP interactions: 1 interactions with chain F, 2 interactions with chain A, 1 interactions with chain C Hydrogen bonds: F:Q.59, A:D.154 Water bridges: A:L.45, C:E.103

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.10: 3 residues within 4Å: Chain D: R.70, S.72, N.74 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.74, D:N.74 NAG.12: 3 residues within 4Å: Chain E: A.71, S.72, N.74 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, W. et al., HVEM structures and mutants reveal distinct functions of binding to LIGHT and BTLA/CD160. J.Exp.Med. (2021)

Release Date

2015-02-04

Peptides

Tumor necrosis factor ligand superfamily member 14, soluble form: ABC
Tumor necrosis factor receptor superfamily member 14: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Tumor necrosis factor ligand superfamily member 14, soluble form

Tumor necrosis factor receptor superfamily member 14

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