SMTL ID : 4rsu.3 (2 other biounits)

Crystal structure of the light and hvem complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-3-3-mer

Ligands

7 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: R.153, D.154, G.155, T.156, R.157, S.158 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: R.97 Chain D: L.54, S.55 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: L.43, G.44 Chain F: K.56, C.57 Ligand excluded by PLIP CL.5: 6 residues within 4Å: Chain B: R.153, D.154, G.155, T.156, R.157, S.158 Ligand excluded by PLIP CL.7: 6 residues within 4Å: Chain C: R.153, D.154, G.155, T.156, R.157, S.158 Ligand excluded by PLIP CL.11: 5 residues within 4Å: Chain C: L.43, G.44 Chain E: R.26, K.56, C.57 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain C: R.97 Chain F: L.54, S.55 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: L.102, E.103 Chain B: L.45, D.154, T.156 Chain D: L.58, Q.59 5 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A, 1 interactions with chain D Hydrogen bonds: B:D.154, A:E.103, D:Q.59 Water bridges: B:L.45, A:E.103 GOL.6: 6 residues within 4Å: Chain B: L.102, E.103 Chain C: L.45, D.154, T.156 Chain E: Q.59 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain E Hydrogen bonds: C:D.154, E:Q.59 Water bridges: C:G.44, E:C.57 GOL.8: 9 residues within 4Å: Chain A: S.125, S.126, F.127 Chain B: S.125, S.126, F.127 Chain C: S.125, S.126, F.127 8 PLIP interactions: 3 interactions with chain C, 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: C:F.127, A:S.125, A:F.127, B:F.127, B:F.127 Water bridges: C:S.126, C:F.127, A:S.125 GOL.9: 5 residues within 4Å: Chain A: D.154 Chain C: L.102, E.103 Chain F: L.58, Q.59 6 PLIP interactions: 1 interactions with chain C, 3 interactions with chain F, 2 interactions with chain A Hydrogen bonds: C:E.103, F:Q.59 Water bridges: F:Q.59, F:Q.59, A:D.154, A:D.154

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.10: 4 residues within 4Å: Chain D: R.70, A.71, S.72, N.74 No protein-ligand interaction detected (PLIP) NAG.12: 4 residues within 4Å: Chain E: A.71, S.72, R.73, N.74 No protein-ligand interaction detected (PLIP) NAG.14: 4 residues within 4Å: Chain F: R.70, A.71, S.72, N.74 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, W. et al., HVEM structures and mutants reveal distinct functions of binding to LIGHT and BTLA/CD160. J.Exp.Med. (2021)

Release Date

2015-02-04

Peptides

Tumor necrosis factor ligand superfamily member 14, soluble form: ABC
Tumor necrosis factor receptor superfamily member 14: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
I

D
J

E
K

F
L

Tumor necrosis factor ligand superfamily member 14, soluble form

Tumor necrosis factor receptor superfamily member 14

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