SMTL ID : 4ty7.1

Factor XIa in complex with the inhibitor (2S)-6-amino-N-{(1S)-1-[4-(3-amino-2H-indazol-6-yl)-5-chloro-1H-imidazol-2-yl]-2-phenylethyl}-2-ethylhexanamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

1 x 39F: trans-N-{(1S)-1-[4-(3-amino-2H-indazol-6-yl)-5-chloro-1H-imidazol-2-yl]-2-phenylethyl}-4-(aminomethyl)cyclohexane-1-carboxamide(Non-covalent)

39F.1: 20 residues within 4Å: Chain A: R.26, H.27, L.28, C.29, H.44, C.45, Y.134, I.141, D.182, A.183, C.184, K.185, G.186, D.187, S.188, T.206, S.207, W.208, G.211, C.212 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.28, A:I.141, A:T.206 Hydrogen bonds: A:R.26, A:H.27, A:G.186, A:D.187, A:S.188, A:S.188, A:G.211 Water bridges: A:H.27, A:I.141

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.161, R.177 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.161, A:R.177 SO4.3: 10 residues within 4Å: Chain A: S.7, V.8, R.9, G.10, E.11, W.12, P.13, I.61, L.62, L.145 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.10, A:E.11, A:W.12, A:W.12, A:I.61

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: N.36, T.102, V.103, G.104, Y.105 Ligands: EDO.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.36, A:Y.105 EDO.5: 4 residues within 4Å: Chain A: Q.64, S.65, I.141, N.143 No protein-ligand interaction detected (PLIP) EDO.6: 2 residues within 4Å: Chain A: R.9, L.62 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.9 Water bridges: A:N.63 EDO.7: 2 residues within 4Å: Chain A: T.168, H.169 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.169 EDO.8: 3 residues within 4Å: Chain A: G.104, Y.105 Ligands: EDO.4 2 PLIP interactions: 2 interactions with chain A Water bridges: A:G.104, A:Y.105 EDO.9: 4 residues within 4Å: Chain A: V.153, M.171, I.172, N.223 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.171 Water bridges: A:N.155, A:N.155 EDO.10: 6 residues within 4Å: Chain A: S.90, G.91, Y.92, T.168, K.170, Y.227 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.90, A:Y.92, A:T.168 Water bridges: A:Y.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hangeland, J.J. et al., Phenylimidazoles as Potent and Selective Inhibitors of Coagulation Factor XIa with in Vivo Antithrombotic Activity. J.Med.Chem. (2014)

Release Date

2014-12-03

Peptides

Coagulation factor XI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Coagulation factor XI

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