- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.49 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.3: 7 residues within 4Å:- Chain A: L.254, H.393, L.394, Y.397, N.691
- Ligands: HBX.14, HBX.16
2 PLIP interactions:2 interactions with chain A- Water bridges: A:L.394, A:N.691
PGE.19: 7 residues within 4Å:- Chain B: L.254, H.393, L.394, Y.397, N.691
- Ligands: HBX.30, HBX.32
2 PLIP interactions:2 interactions with chain B- Water bridges: B:L.394, B:N.691
- 2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)
IPA.4: 5 residues within 4Å:- Chain A: K.884, G.888, V.889, R.890, Y.892
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:R.890, A:Y.892
- Hydrogen bonds: A:G.888, A:R.890
IPA.20: 5 residues within 4Å:- Chain B: K.884, G.888, V.889, R.890, Y.892
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:R.890, B:Y.892
- Hydrogen bonds: B:G.888, B:R.890
- 2 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.5: 9 residues within 4Å:- Chain A: R.460, S.461, L.498, S.530, A.531, F.532, Y.535, G.536, Q.539
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.461, A:F.532, A:F.532
- Water bridges: A:S.461
BCT.21: 9 residues within 4Å:- Chain B: R.460, S.461, L.498, S.530, A.531, F.532, Y.535, G.536, Q.539
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.461, B:F.532, B:F.532
- Water bridges: B:S.461
- 8 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
MG.6: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.7: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.8: 1 residues within 4Å:- Chain A: D.263
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.263, H2O.25, H2O.25, H2O.49
MG.9: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.22: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.23: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.24: 1 residues within 4Å:- Chain B: D.263
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.263, H2O.74, H2O.74, H2O.98
MG.25: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.10: 2 residues within 4Å:- Chain A: Y.892, R.893
Ligand excluded by PLIPCL.11: 3 residues within 4Å:- Chain A: Y.897, P.898, E.899
Ligand excluded by PLIPCL.26: 2 residues within 4Å:- Chain B: Y.892, R.893
Ligand excluded by PLIPCL.27: 3 residues within 4Å:- Chain B: Y.897, P.898, E.899
Ligand excluded by PLIP- 2 x PCD: (MOLYBDOPTERIN-CYTOSINE DINUCLEOTIDE-S,S)-DIOXO-AQUA-MOLYBDENUM(V)(Non-covalent)
PCD.12: 37 residues within 4Å:- Chain A: Q.99, C.139, G.419, T.420, F.421, G.422, A.531, F.532, R.533, W.650, H.653, G.654, Q.655, G.656, G.660, S.695, G.696, G.697, S.698, R.699, Q.700, Q.701, L.795, S.797, L.798, C.799, N.800, T.804, Q.807, A.864, S.865, G.866, V.867, G.868, E.869
- Ligands: HBX.13, HBX.15
23 PLIP interactions:23 interactions with chain A- Hydrophobic interactions: A:Q.701, A:V.867
- Hydrogen bonds: A:Q.99, A:T.420, A:F.421, A:F.421, A:H.653, A:H.653, A:Q.655, A:G.656, A:G.697, A:R.699, A:Q.700, A:Q.701, A:Q.701, A:S.797, A:C.799, A:N.800, A:Q.807, A:V.867, A:G.868, A:E.869
- Water bridges: A:R.533
PCD.28: 37 residues within 4Å:- Chain B: Q.99, C.139, G.419, T.420, F.421, G.422, A.531, F.532, R.533, W.650, H.653, G.654, Q.655, G.656, G.660, S.695, G.696, G.697, S.698, R.699, Q.700, Q.701, L.795, S.797, L.798, C.799, N.800, T.804, Q.807, A.864, S.865, G.866, V.867, G.868, E.869
- Ligands: HBX.29, HBX.31
22 PLIP interactions:22 interactions with chain B- Hydrophobic interactions: B:Q.701, B:V.867
- Hydrogen bonds: B:Q.99, B:T.420, B:F.421, B:F.421, B:H.653, B:Q.655, B:G.656, B:G.697, B:R.699, B:Q.700, B:Q.701, B:Q.701, B:S.797, B:C.799, B:N.800, B:Q.807, B:V.867, B:G.868, B:E.869
- Water bridges: B:R.533
- 8 x HBX: benzaldehyde(Non-covalent)
HBX.13: 11 residues within 4Å:- Chain A: F.425, L.497, R.501, A.531, Y.535, L.626, D.627, G.697
- Ligands: PCD.12, HBX.15, HBX.16
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:L.497, A:A.531, A:L.626
- Hydrogen bonds: A:R.501, A:D.627
- pi-Stacking: A:F.425, A:Y.535
HBX.14: 8 residues within 4Å:- Chain A: I.255, L.394, F.425, F.494, L.626, P.694
- Ligands: PGE.3, HBX.16
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:I.255, A:L.394, A:F.425, A:F.494, A:L.626
- Water bridges: A:N.691
HBX.15: 12 residues within 4Å:- Chain A: F.425, L.497, R.501, A.531, Y.535, L.626, G.696, G.697, E.869
- Ligands: PCD.12, HBX.13, HBX.16
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:L.497, A:A.531, A:L.626
- Hydrogen bonds: A:G.697
- pi-Stacking: A:F.425, A:Y.535
HBX.16: 9 residues within 4Å:- Chain A: I.255, L.394, F.425, L.497, L.626
- Ligands: PGE.3, HBX.13, HBX.14, HBX.15
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:I.255, A:L.394, A:F.425, A:L.626
- Water bridges: A:D.627
HBX.29: 11 residues within 4Å:- Chain B: F.425, L.497, R.501, A.531, Y.535, L.626, D.627, G.697
- Ligands: PCD.28, HBX.31, HBX.32
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:L.497, B:A.531, B:L.626
- Hydrogen bonds: B:R.501, B:D.627, B:D.627
- pi-Stacking: B:F.425, B:Y.535
HBX.30: 8 residues within 4Å:- Chain B: I.255, L.394, F.425, F.494, L.626, P.694
- Ligands: PGE.19, HBX.32
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:I.255, B:L.394, B:F.425, B:F.494, B:L.626
- Water bridges: B:N.691
HBX.31: 12 residues within 4Å:- Chain B: F.425, L.497, R.501, A.531, Y.535, L.626, G.696, G.697, E.869
- Ligands: PCD.28, HBX.29, HBX.32
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:L.497, B:A.531, B:L.626
- Hydrogen bonds: B:G.697
- pi-Stacking: B:F.425, B:Y.535
HBX.32: 9 residues within 4Å:- Chain B: I.255, L.394, F.425, L.497, L.626
- Ligands: PGE.19, HBX.29, HBX.30, HBX.31
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:I.255, B:L.394, B:F.425, B:L.626
- Water bridges: B:D.627
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Correia, H.D. et al., Aromatic Aldehydes at the Active Site of Aldehyde Oxidoreductase from Desulfovibrio Gigas: Reactivity and Molecular Details of the Enzyme-Substrate and Enzyme-Product Interaction. J.Biol.Inorg.Chem. (2015)
- Release Date
- 2014-10-08
- Peptides
- ALDEHYDE OXIDOREDUCTASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.49 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)
- 2 x BCT: BICARBONATE ION(Non-functional Binders)
- 8 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x PCD: (MOLYBDOPTERIN-CYTOSINE DINUCLEOTIDE-S,S)-DIOXO-AQUA-MOLYBDENUM(V)(Non-covalent)
- 8 x HBX: benzaldehyde(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Correia, H.D. et al., Aromatic Aldehydes at the Active Site of Aldehyde Oxidoreductase from Desulfovibrio Gigas: Reactivity and Molecular Details of the Enzyme-Substrate and Enzyme-Product Interaction. J.Biol.Inorg.Chem. (2015)
- Release Date
- 2014-10-08
- Peptides
- ALDEHYDE OXIDOREDUCTASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A