SMTL ID : 4wnh.1

Crystal structure of mouse Xyloside xylosyltransferase 1 complexed with manganese,acceptor ligand and UDP-Xylose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-mer

Ligands

1 x BGC- XYS: alpha-D-xylopyranose-(1-3)-beta-D-glucopyranose(Post Translational Modification)

BGC-XYS.1: 15 residues within 4Å: Chain A: E.169, Q.171, V.173, N.202, L.241, Q.244, C.270, W.272, W.273, N.298, C.299 Chain B: C.9, E.10, S.11 Ligands: UDX.3 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.11, A:N.202, A:Q.244, A:C.299

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: D.139, D.141, H.296 Ligands: UDX.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.139, A:D.141, A:D.141, A:H.296

1 x UDX: URIDINE-5'-DIPHOSPHATE-XYLOPYRANOSE(Non-covalent)

UDX.3: 17 residues within 4Å: Chain A: M.17, F.18, T.19, L.27, D.139, L.140, D.141, N.202, S.203, L.241, D.243, Q.244, H.296, N.298, C.299 Ligands: BGC-XYS.1, MN.2 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:T.19, A:T.19, A:L.140, A:D.141, A:D.141, A:N.202, A:S.203, A:S.203, A:L.241, A:Q.244, A:C.299 Water bridges: A:M.17, A:K.30, A:K.30 Salt bridges: A:H.296

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, H. et al., Crystal structure of mouse Xyloside xylosyltransferase 1 complexed with manganese,acceptor ligand and UDP-Xylose. To Be Published

Release Date

2015-09-30

Peptides

Xyloside xylosyltransferase 1: A
Coagulation factor IX: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Xyloside xylosyltransferase 1

Coagulation factor IX

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