SMTL ID : 4x6o.1

FACTOR XIA IN COMPLEX WITH THE INHIBITOR methyl (4-{4-chloro-2-[(1S)-1-({3-[5-chloro-2-(1H-tetrazol-1-yl)phenyl]propanoyl}amino)-2-phenylethyl]-1H-imidazol-5-yl}phenyl)carbamate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x 3Y4: methyl (4-{4-chloro-2-[(1S)-1-({3-[5-chloro-2-(1H-tetrazol-1-yl)phenyl]propanoyl}amino)-2-phenylethyl]-1H-imidazol-5-yl}phenyl)carbamate(Non-covalent)

3Y4.1: 27 residues within 4Å: Chain A: R.26, H.27, L.28, C.29, H.44, C.45, Y.134, L.137, I.141, D.182, A.183, C.184, K.185, G.186, D.187, S.188, T.206, S.207, W.208, G.209, G.211, C.212, G.219, V.220, Y.221 Ligands: EDO.4, EDO.8 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.28, A:I.141, A:T.206 Hydrogen bonds: A:H.27, A:K.185, A:G.186, A:D.187, A:S.188, A:S.188 Water bridges: A:L.28, A:G.209

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 10 residues within 4Å: Chain A: S.7, V.8, R.9, G.10, E.11, W.12, P.13, I.61, L.62, L.145 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.10, A:E.11, A:W.12, A:W.12, A:I.61 Water bridges: A:I.61 SO4.3: 2 residues within 4Å: Chain A: R.161, R.177 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.161, A:R.177

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: K.185 Ligands: 3Y4.1, EDO.8, EDO.9 No protein-ligand interaction detected (PLIP) EDO.5: 5 residues within 4Å: Chain A: N.36, T.102, V.103, G.104, Y.105 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.36, A:Y.105 EDO.6: 4 residues within 4Å: Chain A: Q.64, S.65, I.141, N.143 No protein-ligand interaction detected (PLIP) EDO.7: 2 residues within 4Å: Chain A: R.9, L.62 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.9 Water bridges: A:N.63 EDO.8: 7 residues within 4Å: Chain A: L.137, G.209, E.210, G.211 Ligands: 3Y4.1, EDO.4, EDO.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.209, A:G.211 Water bridges: A:K.185 EDO.9: 6 residues within 4Å: Chain A: E.89, W.208, G.209, E.210 Ligands: EDO.4, EDO.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.210 Water bridges: A:G.209, A:G.209 EDO.10: 2 residues within 4Å: Chain A: T.168, H.169 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.169 EDO.11: 5 residues within 4Å: Chain A: H.44, Y.85, M.87, A.88, E.89 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.85, A:A.88, A:E.89, A:E.89, A:E.89 EDO.12: 5 residues within 4Å: Chain A: P.111, I.112, C.113, V.199, W.200 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.111, A:C.113, A:W.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pinto, D.J. et al., Structure-based design of inhibitors of coagulation factor XIa with novel P1 moieties. Bioorg.Med.Chem.Lett. (2015)

Release Date

2015-02-18

Peptides

Coagulation factor XI, light chain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Coagulation factor XI, light chain

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