SMTL ID : 4xkl.2 (1 other biounit)

Crystal structure of NDP52 ZF2 in complex with mono-ubiquitin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: T.11, L.12, T.13, G.14, L.73, V.74, L.75 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:L.12, A:T.13, A:G.14, A:L.73, A:L.75 Water bridges: A:T.13, A:T.13

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 2 residues within 4Å: Chain A: K.15, T.16 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.16, A:T.16 ACT.3: 3 residues within 4Å: Chain B: C.6, I.15, P.17 No protein-ligand interaction detected (PLIP)

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain B: C.9, C.12, H.27, H.31 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.9, B:C.12, B:H.27, B:H.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, X. et al., Molecular basis of ubiquitin recognition by the autophagy receptor CALCOCO2. Autophagy (2015)

Release Date

2015-11-11

Peptides

Ubiquitin: A
Calcium-binding and coiled-coil domain-containing protein 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Ubiquitin

Calcium-binding and coiled-coil domain-containing protein 2

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