SMTL ID : 9fcj.1

USP1 bound to ML323 and ubiquitin conjugated to FANCD2 (ordered subset, focused refinement)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION

ZN.1: 4 residues within 4Å: Chain B: C.441, C.444, C.507, C.510 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.441, B:C.444, B:C.507, B:C.510

1 x JDA: 5-methyl-2-(2-propan-2-ylphenyl)-~{N}-[[4-(1,2,3-triazol-1-yl)phenyl]methyl]pyrimidin-4-amine

JDA.2: 16 residues within 4Å: Chain B: L.97, Q.98, Y.101, L.153, V.157, L.160, Q.161, F.164, Y.171, L.182, Y.744, L.749, F.751, D.753, S.754, V.756 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:Q.98, B:Y.101, B:L.153, B:V.157, B:V.157, B:Q.161, B:F.164, B:L.182, B:V.756 Hydrogen bonds: B:Q.98, B:Q.161, B:Y.171, B:Y.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rennie, M.L. et al., Structural and Biochemical Insights into the Mechanism of Action of the Clinical USP1 Inhibitor, KSQ-4279. J.Med.Chem. (2024)

Release Date

2024-09-04

Peptides

Polyubiquitin-C: A
Ubiquitin carboxyl-terminal hydrolase 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Polyubiquitin-C

Ubiquitin carboxyl-terminal hydrolase 1

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