SMTL ID : 8a9k.1

Cryo-EM structure of USP1-UAF1 bound to FANCI and mono-ubiquitinated FANCD2 with ML323 (consensus reconstruction)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain D: C.441, C.444, C.507, C.510 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.441, D:C.444, D:C.507, D:C.510

1 x JDA: 5-methyl-2-(2-propan-2-ylphenyl)-~{N}-[[4-(1,2,3-triazol-1-yl)phenyl]methyl]pyrimidin-4-amine(Non-covalent)

JDA.2: 13 residues within 4Å: Chain D: N.94, L.97, Q.98, Y.101, V.157, L.160, Q.161, F.164, L.749, F.751, D.753, S.754, V.756 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:N.94, D:Q.98, D:Y.101, D:V.157, D:V.157, D:Q.161, D:F.164, D:F.751, D:F.751, D:V.756 Hydrogen bonds: D:Q.98, D:Q.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rennie, M.L. et al., Cryo-EM reveals a mechanism of USP1 inhibition through a cryptic binding site. Sci Adv (2022)

Release Date

2022-10-12

Peptides

Fanconi anemia group I protein: A
Fanconi anemia group D2 protein: B
Polyubiquitin-C: C
Ubiquitin carboxyl-terminal hydrolase 1: D
WD repeat-containing protein 48: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Fanconi anemia group I protein

Fanconi anemia group D2 protein

Polyubiquitin-C

Ubiquitin carboxyl-terminal hydrolase 1

WD repeat-containing protein 48

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