SMTL ID : 7zh4.1

USP1 bound to ML323 and ubiquitin conjugated to FANCD2 (focused refinement)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: C.441, C.444, C.507, C.510 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.441, B:C.444, B:C.507, B:C.510

1 x JDA: 5-methyl-2-(2-propan-2-ylphenyl)-~{N}-[[4-(1,2,3-triazol-1-yl)phenyl]methyl]pyrimidin-4-amine(Non-covalent)

JDA.2: 13 residues within 4Å: Chain B: N.94, L.97, Q.98, Y.101, V.157, L.160, Q.161, F.164, L.749, F.751, D.753, S.754, V.756 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:N.94, B:L.97, B:Q.98, B:Y.101, B:V.157, B:V.157, B:Q.161, B:Q.161, B:F.164, B:F.164, B:F.751, B:V.756 Hydrogen bonds: B:Q.98, B:Q.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rennie, M.L. et al., Cryo-EM reveals a mechanism of USP1 inhibition through a cryptic binding site. Sci Adv (2022)

Release Date

2022-10-12

Peptides

Ubiquitin-60S ribosomal protein L40: A
Ubiquitin carboxyl-terminal hydrolase 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Ubiquitin-60S ribosomal protein L40

Ubiquitin carboxyl-terminal hydrolase 1

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