SMTL ID : 4xpg.1

X-ray structure of Drosophila dopamine transporter with subsiteB mutations (D121G/S426M) bound to beta-CFT or Win35428

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.21 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 42L: methyl (1R,2S,3S,5S)-3-(4-fluorophenyl)-8-methyl-8-azabicyclo[3.2.1]octane-2-carboxylate(Non-covalent)

42L.1: 14 residues within 4Å: Chain A: F.24, A.25, D.27, A.98, V.101, Y.104, Y.105, F.257, S.258, G.260, F.263, S.359, G.363 Ligands: NA.5 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.24, A:F.24, A:V.101, A:F.263 Salt bridges: A:D.27 pi-Stacking: A:Y.105, A:F.263 Halogen bonds: A:A.98

2 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 7 residues within 4Å: Chain A: V.15, L.18, L.208, Y.211, L.215, I.289, I.296 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.15, A:L.18, A:L.208, A:Y.211, A:Y.211, A:L.215, A:I.296 CLR.3: 6 residues within 4Å: Chain A: L.54, A.55, I.59, Y.280, F.288, W.457 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.54, A:F.288, A:W.457

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: Y.50, Q.254, S.258, S.294 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.5: 5 residues within 4Å: Chain A: A.25, N.30, S.258, N.290 Ligands: 42L.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.25, A:N.30 NA.6: 5 residues within 4Å: Chain A: G.23, V.26, L.355, D.358, S.359 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.355, A:S.359

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, K.H. et al., Neurotransmitter and psychostimulant recognition by the dopamine transporter. Nature (2015)

Release Date

2015-05-06

Peptides

Dopamine transporter: A
antibody fragment light chain: B
antibody fragment heavy chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
L

C
H

Membrane

We predict this structure to be a membrane protein.
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Dopamine transporter

antibody fragment light chain

antibody fragment heavy chain

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