SMTL ID : 4m48.1

X-ray structure of dopamine transporter elucidates antidepressant mechanism

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.96 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: A.25, D.27, N.30, S.258, N.290 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.30, A:N.290 NA.2: 6 residues within 4Å: Chain A: G.23, V.26, D.27, L.355, D.358, S.359 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.359, A:S.359

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: F.34, Y.50, Q.254, S.258, S.294 Ligand excluded by PLIP

1 x 21B: Nortriptyline(Non-covalent)

21B.4: 14 residues within 4Å: Chain A: F.24, A.25, D.27, A.98, V.101, D.102, Y.105, F.257, S.258, F.263, S.359, S.360, G.363, A.417 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.24, A:V.101, A:V.101, A:Y.105, A:Y.105, A:F.263, A:F.263, A:A.417

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.5: 7 residues within 4Å: Chain A: V.15, L.18, L.208, Y.211, L.215, I.289, I.296 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.18, A:L.208, A:Y.211, A:L.215, A:I.289, A:I.289, A:I.296

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Penmatsa, A. et al., X-ray structure of dopamine transporter elucidates antidepressant mechanism. Nature (2013)

Release Date

2013-09-18

Peptides

Transporter: A
9D5 antibody, light chain: B
9D5 antibody, heavy chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
L

C
H

Membrane

We predict this structure to be a membrane protein.
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Transporter

9D5 antibody, light chain

9D5 antibody, heavy chain

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