SMTL ID : 4xpa.1

X-ray structure of Drosophila dopamine transporter bound to 3,4dichlorophenethylamine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x BGC- GLC: alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-GLC.1: 6 residues within 4Å: Chain A: R.114, F.117, A.118, P.125, Y.159, D.178 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.114, A:R.114, A:Y.159 Salt bridges: A:R.114

2 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 7 residues within 4Å: Chain A: V.15, L.18, L.210, Y.213, L.217, I.291, I.298 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.18, A:L.210, A:Y.213, A:L.217, A:I.298 CLR.3: 9 residues within 4Å: Chain A: L.54, A.55, I.59, Y.282, F.290, A.294, F.297, Y.458, W.459 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.54, A:F.290, A:F.297, A:W.459, A:W.459

1 x 42J: 2-(3,4-dichlorophenyl)ethanamine(Non-covalent)

42J.4: 11 residues within 4Å: Chain A: F.24, A.25, D.27, V.101, D.102, Y.105, F.259, F.265, S.361, S.362, G.365 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.24, A:F.24 Hydrogen bonds: A:A.25 pi-Stacking: A:Y.105, A:F.265 Halogen bonds: A:D.102

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 6 residues within 4Å: Chain A: N.30, F.34, Y.50, Q.256, S.260, S.296 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.6: 6 residues within 4Å: Chain A: A.25, V.26, D.27, N.30, S.260, N.292 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.27, A:D.27, A:D.27, A:N.30, A:N.292 NA.7: 7 residues within 4Å: Chain A: G.23, F.24, V.26, L.357, G.358, D.360, S.361 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.358, A:S.361

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, K.H. et al., Neurotransmitter and psychostimulant recognition by the dopamine transporter. Nature (2015)

Release Date

2015-05-20

Peptides

Transporter: A
Antibody fragment heavy chain-protein, 9D5-heavy chain: B
Antibody fragment light chain-protein, 9D5-light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
L

C
H

Membrane

We predict this structure to be a membrane protein.
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Transporter

Antibody fragment heavy chain-protein, 9D5-heavy chain

Antibody fragment light chain-protein, 9D5-light chain

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