SMTL ID : 9eup.1

Inhibitor-free outward-open structure of Drosophila dopamine transporter

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.1: 18 residues within 4Å: Chain A: F.34, L.47, Y.50, G.51, L.54, A.55, I.59, P.60, Y.280, L.284, F.288, S.291, A.292, F.295, G.454, R.455, Y.456, W.457 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.50, A:L.54, A:L.54, A:A.55, A:I.59, A:Y.456, A:Y.456, A:W.457, A:W.457 Hydrogen bonds: A:R.455

1 x 144: TRIS-HYDROXYMETHYL-METHYL-AMMONIUM(Non-covalent)

144.2: 11 residues within 4Å: Chain A: F.24, A.25, V.26, D.27, F.257, S.258, L.259, G.260, F.263, S.359 Ligands: NA.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:F.24, A:F.24, A:D.27, A:F.257 Salt bridges: A:D.27 pi-Cation interactions: A:F.263

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.3: 12 residues within 4Å: Chain A: V.15, L.18, L.19, I.22, L.208, Y.211, L.214, L.215, L.218, L.285, I.289, I.296 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.18, A:L.19, A:I.22, A:L.208, A:L.215, A:I.296

2 x NA: SODIUM ION(Non-functional Binders)

NA.4: 7 residues within 4Å: Chain A: A.25, V.26, D.27, N.30, S.258, N.290 Ligands: 144.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.25, A:D.27, A:N.30 NA.5: 6 residues within 4Å: Chain A: G.23, V.26, D.27, L.355, D.358, S.359 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.358, A:S.359, A:S.359

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 7 residues within 4Å: Chain A: N.30, F.34, Y.50, Q.254, S.258, N.290, S.294 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pedersen, C.N. et al., Cryo-EM structure of the dopamine transporter with a novel atypical non-competitive inhibitor bound to the orthosteric site. J.Neurochem. (2024)

Release Date

2024-07-24

Peptides

Sodium-dependent dopamine transporter: A
9D5 ANTIBODY, HEAVY CHAIN: B
9D5 ANTIBODY, LIGHT CHAIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Sodium-dependent dopamine transporter

9D5 ANTIBODY, HEAVY CHAIN

9D5 ANTIBODY, LIGHT CHAIN

Related Entries With Identical Sequence