SMTL ID : 4y7a.1

Factor Xa complex with GTC000422

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.56, N.58, Q.61, E.66 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.56, A:N.58, A:Q.61, A:E.66, H2O.4

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: Y.173, D.174, R.211, K.214 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.173, A:D.174, A:R.211, A:K.214, H2O.5

1 x 987: N-[(3S)-1-{(2S)-1-[(3S)-3-aminopiperidin-1-yl]-1-oxopropan-2-yl}-2-oxopyrrolidin-3-yl]-6-chloronaphthalene-2-sulfonamid e(Non-covalent)

987.3: 18 residues within 4Å: Chain A: K.82, E.83, T.84, Y.85, F.162, D.179, A.180, Q.182, S.185, V.203, S.204, W.205, G.206, G.208, C.209, G.216, I.217, Y.218 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.162, A:A.180, A:V.203, A:W.205 Hydrogen bonds: A:E.83, A:Q.182, A:G.206 Water bridges: A:G.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Convery, M.A. et al., Factor Xa complex with GTC000422. to be published

Release Date

2015-09-30

Peptides

Coagulation factor X: A
Coagulation factor X: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Coagulation factor X

Coagulation factor X

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