SMTL ID : 4y7r.1

Crystal structure of WDR5 in complex with MYC MbIIIb peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x GLU- GLU- ILE- ASP- VAL- VAL- SER- VAL: MYC MbIIIb peptide(Non-covalent)

GLU-GLU-ILE-ASP-VAL-VAL-SER-VAL.1: 12 residues within 4Å: Chain A: R.160, S.202, P.203, N.204, K.206, Y.207, K.229, F.245, V.247, K.251, L.267, Q.268 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:N.204, A:Y.207, A:F.245, A:L.267 Hydrogen bonds: A:N.204, A:N.204, A:K.229, A:Q.268, A:Q.268 Salt bridges: A:K.206, A:K.229

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 9 residues within 4Å: Chain A: S.28, S.29, S.70, D.71, F.112, S.154, C.240, F.242, I.284 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.70, A:F.112, A:F.242 Water bridges: A:S.29

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: Y.239, D.281, L.300, E.301, N.302 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.301 Water bridges: A:N.302

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thomas, L.R. et al., Interaction with WDR5 Promotes Target Gene Recognition and Tumorigenesis by MYC. Mol.Cell (2015)

Release Date

2015-04-15

Peptides

WD repeat-containing protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

WD repeat-containing protein 5

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