SMTL ID : 4y8y.1

Factor XIa in complex with the inhibitor methyl (4-{4-chloro-2-[(1S)-1-({(2E)-3-[5-chloro-2-(1H-tetrazol-1-yl)phenyl]prop-2-enoyl}amino)-3-(morpholin-4-yl)-3-oxopropyl]-1H-imidazol-5-yl}phenyl)carbamate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x 4D5: methyl (4-{4-chloro-2-[(1S)-1-({(2E)-3-[5-chloro-2-(1H-tetrazol-1-yl)phenyl]prop-2-enoyl}amino)-3-(morpholin-4-yl)-3-oxopropyl]-1H-imidazol-5-yl}phenyl)carbamate(Non-covalent)

4D5.1: 27 residues within 4Å: Chain A: R.26, H.27, L.28, H.44, Y.47, Y.134, L.137, I.141, D.182, A.183, C.184, K.185, G.186, D.187, S.188, T.206, S.207, W.208, G.209, E.210, G.211, C.212, G.219, V.220, Y.221 Ligands: EDO.4, EDO.8 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.141, A:T.206 Hydrogen bonds: A:R.26, A:H.27, A:K.185, A:G.186, A:D.187, A:S.188, A:S.188 Water bridges: A:S.188, A:G.209

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 10 residues within 4Å: Chain A: S.7, V.8, R.9, G.10, E.11, W.12, P.13, I.61, L.62, L.145 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.10, A:E.11, A:W.12, A:W.12, A:I.61 SO4.3: 2 residues within 4Å: Chain A: R.161, R.177 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.161, A:R.177

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: K.185 Ligands: 4D5.1, EDO.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.185 EDO.5: 5 residues within 4Å: Chain A: N.36, T.102, V.103, G.104, Y.105 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.36, A:Y.105, A:Y.105 EDO.6: 4 residues within 4Å: Chain A: Q.64, S.65, I.141, N.143 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.143 EDO.7: 2 residues within 4Å: Chain A: R.9, L.62 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.9 EDO.8: 8 residues within 4Å: Chain A: L.137, K.185, G.209, E.210, G.211 Ligands: 4D5.1, EDO.4, EDO.9 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.185, A:K.185, A:G.211 Water bridges: A:G.209 EDO.9: 6 residues within 4Å: Chain A: E.89, H.165, W.208, G.209, E.210 Ligands: EDO.8 No protein-ligand interaction detected (PLIP) EDO.10: 2 residues within 4Å: Chain A: T.168, H.169 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, Z. et al., Discovery of a Potent Parenterally Administered Factor XIa Inhibitor with Hydroxyquinolin-2(1H)-one as the P2' Moiety. ACS Med Chem Lett (2015)

Release Date

2015-05-27

Peptides

Coagulation factor XIa: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Coagulation factor XIa

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