SMTL ID : 4yig.2 (2 other biounits)

vaccinia virus D4/A20(1-50) in complex with dsDNA containing an abasic site and free uracyl

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x URA: URACIL(Non-covalent)

URA.1: 11 residues within 4Å: Chain A: G.80, I.81, D.82, P.83, Y.84, P.92, F.93, S.102, N.134, H.195 Chain C: X.5 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:I.81, A:D.82, A:F.93, A:S.102, A:N.134, A:N.134, A:H.195 pi-Stacking: A:Y.84, A:F.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Burmeister, W.P. et al., Crystal Structure of the Vaccinia Virus Uracil-DNA Glycosylase in Complex with DNA. J.Biol.Chem. (2015)

Release Date

2015-06-10

Peptides

Uracil-DNA glycosylase: A
DNA polymerase processivity factor component A20: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Uracil-DNA glycosylase

DNA polymerase processivity factor component A20

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