SMTL ID : 4yo8.1

Crystal structure of Helicobacter pylori 5'-methylthioadenosine/S-adenosyl homocysteine nucleosidase (MTAN) complexed with (((4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl)(hexyl)amino)methanol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x 4EZ: {[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl](hexyl)amino}methanol(Non-covalent)

4EZ.1: 17 residues within 4Å: Chain A: V.93, A.94, G.95, Q.167, F.168, V.169, V.187, E.188, M.189, E.190, S.212, D.213, A.215, F.223 Chain B: L.119, F.122, H.124 14 PLIP interactions: 12 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:F.168, A:F.223, A:F.223, B:L.119, B:F.122 Hydrogen bonds: A:V.169, A:E.190, A:D.213, A:D.213 Water bridges: A:R.209, A:R.209 Salt bridges: A:E.28, A:E.190 pi-Stacking: A:F.168 4EZ.3: 18 residues within 4Å: Chain A: F.122, H.124 Chain B: M.25, I.67, V.93, A.94, G.95, Q.167, F.168, V.169, V.187, E.188, M.189, E.190, S.212, D.213, A.215, F.223 14 PLIP interactions: 11 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:I.67, B:F.223, A:F.122, A:F.122, A:F.122 Hydrogen bonds: B:V.169, B:M.189, B:E.190, B:D.213, B:D.213 Water bridges: B:R.209 Salt bridges: B:E.28, B:E.190 pi-Stacking: B:F.168

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 1 residues within 4Å: Chain A: E.225 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.225, A:E.225

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, S. et al., New Antibiotic Candidates against Helicobacter pylori. J.Am.Chem.Soc. (2015)

Release Date

2015-11-25

Peptides

Aminodeoxyfutalosine nucleosidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aminodeoxyfutalosine nucleosidase

Related Entries With Identical Sequence